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42 Open 189 Closed
42 Open 189 Closed
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Issues list

TaxVamb for a single sample
#379 opened Dec 19, 2024 by prototaxites
How to run interleaved reads sample
#378 opened Dec 16, 2024 by Damianla
README links to an old version of AVAMB workflow
#372 opened Nov 26, 2024 by bglindner
How to run avamb manually？
#370 opened Nov 19, 2024 by galsang-git
multisplit and or single-sample
#368 opened Nov 13, 2024 by sheaster
2
What does "catalouge.fna.gz" refer to in terms of files?
#365 opened Oct 9, 2024 by lyisrae1
Help needed for RuntimeError: size of tensor a must match the size of tensor b
#364 opened Oct 3, 2024 by MapleHe
2
[Suggestion] Include a way to wash and sort lineage output from MMSeqs2
#361 opened Sep 14, 2024 by Prunoideae
Do not store data multiple times in memory if possible
#354 opened Aug 28, 2024 by jakobnissen
How to install the latest version vamb 4.1.4
#353 opened Aug 19, 2024 by neptuneyt
5
ValueError: Length of TNFs and length of RPKM does not match. Verify the inputs
#352 opened Aug 7, 2024 by shaman-narayanasamy
3
How can we know which contig belongs to the bins
#351 opened Jul 31, 2024 by StickHu
2
Where does the variance come from?
#331 opened Jul 3, 2024 by jakobnissen
@Las02
Test various abundance estimation parameters
#330 opened Jul 2, 2024 by jakobnissen
@Las02
1
A file to map the bins and samples
#320 opened May 10, 2024 by WeimingWHu
1
write_clusters_from_nc_folders exit with error on SLURM but ran successfully on command line
#319 opened May 10, 2024 by WeimingWHu
1
Missing output files
#316 opened Apr 28, 2024 by B1991ing
1
Format of taxonomy tsv needed for taxvamb
#299 opened Mar 15, 2024 by prototaxites
@sgalkina
1
Error during "creating z y v clusters from the final set of bins" avamb workflow
#297 opened Mar 10, 2024 by eperezv
@Paupiera
10
Could not install the latest version of vamb using conda or pip
#294 opened Feb 24, 2024 by quliping
3
Add Windows support upstream Bug is in a dependency of Vamb
#288 opened Feb 10, 2024 by enryH
6
NC bins Needs more info Issue cannot be resolved until we get more information
#287 opened Jan 30, 2024 by LorrieMacc
2
COMEBin comparison
#286 opened Jan 19, 2024 by jsgounot
6
Optimise hyperparams: Medoid radius and default radius
#258 opened Nov 10, 2023 by jakobnissen
@Las02
1
AAE mode taking too long for clustering and tsv file generation
#232 opened Oct 24, 2023 by microbiomix
4
ProTip! Updated in the last three days: updated:>2024-12-22.