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TaxVamb for a single sample #379

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prototaxites opened this issue Dec 19, 2024 · 0 comments
Open

TaxVamb for a single sample #379

prototaxites opened this issue Dec 19, 2024 · 0 comments

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@prototaxites
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Hi,

We are running lots of single-sample metagenomics assemblies. Given the binning performance you state in the TaxVamb preprint, I'm quite keen to give TaxVamb a try to see if it will help with our use case.

If running only a single sample, do the input contigs still need to be renamed to some format ">samplecontig"? It would be nice (and would aid integration into our pipeline) if this isn't necessary to aid comparison of bins from other binning tools.

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