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@RasmussenLab

RasmussenLab

The Rasmussen group focuses on proteome and genome variation, coding variation and deep learning for integration of genomics, proteomics and clinical data.

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  1. vamb vamb Public

    Variational autoencoder for metagenomic binning

    Python 266 47

  2. MOVE MOVE Public

    MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations

    Jupyter Notebook 68 26

  3. phamb phamb Public

    Downstream processing of VAMB binning for Viral Elucidation

    Python 46 8

  4. pimms pimms Public

    Imputing proteomics data using deep learning models

    Python 20 2

  5. IntroToML IntroToML Public

    Forked from Center-for-Health-Data-Science/IntroToML

    Machine Learning course at Copenhagen University, Faculty of Health and Medical Sciences, Center for Health Data Science

    Jupyter Notebook 4

  6. vCentenarian vCentenarian Public

    Repository with supporting code and information for virome analysis of Centenarian metagenomes

    Python 3 3

Repositories

Showing 10 of 33 repositories
  • njab Public

    Not just another biomarkers: Functionality for biomarker discovery

    RasmussenLab/njab’s past year of commit activity
    Python 1 MIT 1 1 1 Updated Dec 24, 2024
  • pimms Public

    Imputing proteomics data using deep learning models

    RasmussenLab/pimms’s past year of commit activity
    Python 20 GPL-3.0 2 2 2 Updated Dec 23, 2024
  • HAPI Public

    Script to run HAPI (Haplotype-Aware Probabilistic model for Indels) to identify the CCR5delta32 deletion in ancient low coverage dna samples

    RasmussenLab/HAPI’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 16, 2024
  • vamb Public

    Variational autoencoder for metagenomic binning

    RasmussenLab/vamb’s past year of commit activity
    Python 266 MIT 47 42 3 Updated Dec 10, 2024
  • VAEs_for_biomedical_data_integration Public

    This is the repository for the paper "On the use of VAEs for biomedical data integration".

    RasmussenLab/VAEs_for_biomedical_data_integration’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 31, 2024
  • python_package Public template

    Example Python package

    RasmussenLab/python_package’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 31, 2024
  • MOVE Public

    MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations

    RasmussenLab/MOVE’s past year of commit activity
    Jupyter Notebook 68 MIT 26 11 2 Updated Oct 28, 2024
  • taxconverter Public

    Unifies the presentation of taxonomic classifiers output

    RasmussenLab/taxconverter’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Oct 22, 2024
  • thesis_template_sund Public

    PhD thesis template using styling from the faculty of health and medical sciences (short SUND in Danish)

    RasmussenLab/thesis_template_sund’s past year of commit activity
    TeX 0 0 0 0 Updated Sep 9, 2024
  • hela_qc_mnt_data Public

    Functionality for processing and analysing HeLa data quality control (QC) and maintenance (MNT) samples processed by MaxQuant

    RasmussenLab/hela_qc_mnt_data’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Aug 19, 2024
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