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Could not install the latest version of vamb using conda or pip #294

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quliping opened this issue Feb 24, 2024 · 3 comments
Open

Could not install the latest version of vamb using conda or pip #294

quliping opened this issue Feb 24, 2024 · 3 comments

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@quliping
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I'm analyzing my metagenomic data using vamb. I'm glad vamb has some new and useful features. However, the latest version of vamb could not be found using conda and pip. The latest version which could be installed was v3.0.2 using bioconda and v3.0.9 using pip.

@jakobnissen
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Is it possible you attempted to install it in an environment where you already have some pacakges installed, such that they are not compatible with Vamb?
Nonetheless, I'd need more information you help you troubleshoot this issue - what OS are you running on, what Python version, are you running in a clean Python environment, and what is the error message you see?

@jakobnissen jakobnissen added the Needs more info Issue cannot be resolved until we get more information label Feb 26, 2024
@quliping
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quliping commented Mar 9, 2024

Is it possible you attempted to install it in an environment where you already have some pacakges installed, such that they are not compatible with Vamb? Nonetheless, I'd need more information you help you troubleshoot this issue - what OS are you running on, what Python version, are you running in a clean Python environment, and what is the error message you see?

Sorry, my description may be not clear, that it seems not a compatible problem. The problem is not that the latest version of the software cannot be installed, but that the new version of the software cannot be found at all. Both conda, mamba, pip could only find vamb v3.0.2 or earlier versions. You can see that the last version of vamb I can found is version v3.0.2 at the anaconda website.

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@jakobnissen
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Vamb is not updated on Conda. It has proven very difficult for me to upgrade it: bioconda/bioconda-recipes#43684

I recommend you use Pip

@jakobnissen jakobnissen removed the Needs more info Issue cannot be resolved until we get more information label Mar 15, 2024
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