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22 Open 7 Closed
22 Open 7 Closed
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Issues list

Button towards Github at bottom of https://imaging.usegalaxy.eu/ is broken
#29 opened Nov 7, 2024 by B0r1sD
Improve granularity of EDAM annotations
#28 opened Nov 7, 2024 by beatrizserrano
1
Adapt image analysis tools to consume OME-Zarr tools dev This issue involves tool development
#27 opened Nov 7, 2024 by beatrizserrano
1
Update documentation for the 'Process image using a BioImage.IO model' Galaxy tool BHEU24 Has been worked on at the BHEU2024 tools dev This issue involves tool development
#26 opened Nov 7, 2024 by B0r1sD
@kostrykin @rabuono
14
Add Galaxy as a BioImage Model Zoo community partner BHEU24 Has been worked on at the BHEU2024 investigation This issue involves some search/research tools dev This issue involves tool development
#25 opened Nov 6, 2024 by B0r1sD
@B0r1sD
2
QuPath Galaxy tools ingredient Ingredients to be used in tutorials and workflows tools dev This issue involves tool development
#24 opened Nov 4, 2024 by annefou
@dianichj
2
Replicate workflow for nuclei segmentation and shape measurements tutorials dev This issue involves writing tutorials workflows dev This issue involves workflow development
#21 opened Sep 18, 2024 by sunyi000
Create outreach slide deck BHEU24 Has been worked on at the BHEU2024 investigation This issue involves some search/research outreach This issue involves the creation of dissemination materials
#19 opened Aug 16, 2024 by beatrizserrano
@beatrizserrano
1
Add OMERO as a File source ingredient Ingredients to be used in tutorials and workflows
#17 opened Aug 15, 2024 by beatrizserrano
Simplified CellProfiler tutorial tutorials dev This issue involves writing tutorials workflows dev This issue involves workflow development
#16 opened Aug 15, 2024 by beatrizserrano
4 tasks
Write tutorial for Cellpose (and maybe create workflow) investigation This issue involves some search/research tutorials dev This issue involves writing tutorials
#15 opened Jul 18, 2024 by kostrykin
Load images from private OMERO ingredient Ingredients to be used in tutorials and workflows
#14 opened Jul 18, 2024 by kostrykin
Load images from the BIA (GTN) ingredient Ingredients to be used in tutorials and workflows
#13 opened Jul 18, 2024 by kostrykin
@annefou
2
Submit images to the BIA ingredient Ingredients to be used in tutorials and workflows
#12 opened Jul 18, 2024 by kostrykin
Refactor the BIA retrieval tool BHEU24 Has been worked on at the BHEU2024 tools dev This issue involves tool development
#11 opened Jul 18, 2024 by kostrykin
2 of 7 tasks
1
@B0r1sD
12
Fostering tool user feedback investigation This issue involves some search/research
#10 opened Jul 18, 2024 by kostrykin
Write tutorial for inference using Bioimage models in Galaxy tutorials dev This issue involves writing tutorials
#9 opened Jul 18, 2024 by kostrykin
Write tutorial for registration of MALDI and histology images BHEU24 Has been worked on at the BHEU2024 interdisciplinary This issue is about interdisciplinary analysis tutorials dev This issue involves writing tutorials
#8 opened Jul 18, 2024 by kostrykin
3 tasks
@sklumpe
8
Write tutorials for Voronoi segmentation BHEU24 Has been worked on at the BHEU2024 tutorials dev This issue involves writing tutorials
#6 opened Jul 18, 2024 by kostrykin
3 tasks
@annefou
3
Create workflow for OMERO/IDR + Ilastik + CellProfiler tutorials dev This issue involves writing tutorials workflows dev This issue involves workflow development
#4 opened Jul 18, 2024 by kostrykin
4 tasks
Create workflow for AI-based image analysis tutorials dev This issue involves writing tutorials workflows dev This issue involves workflow development
#3 opened Jul 18, 2024 by kostrykin
4 tasks
1
Gather list of workflows investigation This issue involves some search/research
#2 opened Jul 18, 2024 by kostrykin
4 tasks
1
ProTip! What’s not been updated in a month: updated:<2024-12-01.