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Load images from the BIA (GTN) #13

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kostrykin opened this issue Jul 18, 2024 · 2 comments
Open

Load images from the BIA (GTN) #13

kostrykin opened this issue Jul 18, 2024 · 2 comments
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ingredient Ingredients to be used in tutorials and workflows

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@kostrykin
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kostrykin commented Jul 18, 2024

There is a tool for loading images from the BIA into the Galaxy history: https://imaging.usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/bia_download/bia_download/0.1.0+galaxy0

This tool should be covered by a tutorial. This doesn't necessarily have to be a dedicated tutorial specifically for that tool, it's sufficient to be included as a step in some other tutorial.

Maybe the tool can also be used in a workflow.

@kostrykin kostrykin added this to BH2024 Jul 18, 2024
@kostrykin kostrykin converted this from a draft issue Jul 18, 2024
@kostrykin kostrykin added the ingredient Ingredients to be used in tutorials and workflows label Jul 18, 2024
@beatrizserrano
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This could be a useful resource if we want to use the preliminary version of the BIA API: https://github.com/bioimage-archive/bia-training

@kostrykin
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kostrykin commented Nov 6, 2024

This could be a useful resource if we want to use the preliminary version of the BIA API: https://github.com/bioimage-archive/bia-training

@beatrizserrano I think you ment to post this in #11 and not here :)

@annefou annefou self-assigned this Nov 6, 2024
@annefou annefou changed the title Load images from the BIA Load images from the BIA (GTN) Nov 7, 2024
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ingredient Ingredients to be used in tutorials and workflows
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