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Create workflow for AI-based image analysis #3

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kostrykin opened this issue Jul 18, 2024 · 1 comment

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tutorials dev workflows dev

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kostrykin commented Jul 18, 2024 •

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AI4Life Open Call examples: https://github.com/ai4life-opencalls

Tool to load BMZ models and do inference: bgruening/galaxytools#1391

Things to be done:

Create the workflow.
Write tutorial for Galaxy Training Network:
- How to reproduce the workflow?
- How to use the workflow?

kostrykin added this to BH2024

kostrykin converted this from a draft issue

kostrykin added tutorials dev workflows dev labels

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Write tutorial using AI model from bioimage.io #18

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4 tasks

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beatrizserrano commented Oct 3, 2024

A nice possible use case would be retrieving data from the BIA and then using a model from the BMZ.
Small datasets from the BIA that we could use:
https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD1367?query=plantseg
https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD1392?query=plantseg
https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD634?query=S-BIAd634

Related to #13 and #11

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