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141 Open 117 Closed
141 Open 117 Closed
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Issues list

[Feature request]: User Local Install Documentation documentation Relating to ReadMEs / gitbook / vignettes / etc. high priority High priority. installation Relating to installation / upgrade / migration.
#401 opened Nov 15, 2024 by TimothyWillard Under 1Hr New Users!
1
[Feature request]: Add --extend, --shift Options To flepimop-calibrate enhancement Request for improvement or addition of new feature(s). gempyor Concerns the Python core. high priority High priority. inference Concerns the parameter inference framework.
#400 opened Nov 15, 2024 by TimothyWillard Incremental Calibration/Projections
[Feature request]: Add lintr Linting For R Packages enhancement Request for improvement or addition of new feature(s). low priority Low priority. meta/workflow Relating to CI / issue templates / testing frameworks / etc. r-flepicommon Relating to the flepicommon R package. r-flepiconfig Relating to the R configuration package. r-inference Relating to the R inference package.
#399 opened Nov 15, 2024 by TimothyWillard
1
[Feature request]: Add pylint Or ruff Linting For gempyor enhancement Request for improvement or addition of new feature(s). gempyor Concerns the Python core. low priority Low priority. meta/workflow Relating to CI / issue templates / testing frameworks / etc.
#398 opened Nov 15, 2024 by TimothyWillard
[Bug]: cyclic dependencies between model_info, seeding, and initial_conditions complicate type hinting dependency For issues with package dependencies. gempyor Concerns the Python core. high priority High priority.
#397 opened Nov 13, 2024 by pearsonca
2
[Feature request]: consolidate "jobs" and "slots"/"chains" for simulation / projection batch Relating to batch processing. low priority Low priority.
#395 opened Nov 11, 2024 by pearsonca
2
[Bug]: gempyor.shared_cli.parse_config_files Raises ValueError When Provided $CONFIG_PATH As Argument bug Defects or errors in the code. config Relating to configuration files or their framework. gempyor Concerns the Python core. medium priority Medium priority.
#389 opened Nov 7, 2024 by TimothyWillard
1
[Bug]: Parsing error in modifiers/inference parameter (checking in bounds?) bug Defects or errors in the code. gempyor Concerns the Python core. inference Concerns the parameter inference framework. low priority Low priority. quick issue Short or easy fix.
#380 opened Nov 1, 2024 by saraloo Stabilize Configuration/Inputs Format
@emprzy
7
[Feature request]: integrate calibrate action into flepimop CLI inference Concerns the parameter inference framework. medium priority Medium priority. operations Refers to specific epi modeling objectives or scenario modeling goals.
#378 opened Oct 31, 2024 by pearsonca Incremental Calibration/Projections
[Feature request]: support computed / derived parameters within configuration files config Relating to configuration files or their framework. gempyor Concerns the Python core. low priority Low priority.
#377 opened Oct 31, 2024 by pearsonca Stabilize Configuration/Inputs Format
[Bug]: Different behaviour when running one_simulation(), compared to gempyor-simulate gempyor Concerns the Python core. low priority Low priority.
#373 opened Oct 29, 2024 by saraloo
[Feature request]: multiple config files patching behavior enhancements config Relating to configuration files or their framework. enhancement Request for improvement or addition of new feature(s). medium priority Medium priority. meta/workflow Relating to CI / issue templates / testing frameworks / etc. operations Refers to specific epi modeling objectives or scenario modeling goals.
#371 opened Oct 29, 2024 by pearsonca
@pearsonca
Updating Workflow: adding a dev branch high priority High priority. meta/workflow Relating to CI / issue templates / testing frameworks / etc. operations Refers to specific epi modeling objectives or scenario modeling goals.
#369 opened Oct 29, 2024 by pearsonca
2
[Feature request]: refactor flepimop_sample into flepimop/examples, provide example project auto copy-paste documentation Relating to ReadMEs / gitbook / vignettes / etc. low priority Low priority. meta/workflow Relating to CI / issue templates / testing frameworks / etc.
#368 opened Oct 29, 2024 by pearsonca Under 1Hr New Users!
[Feature request]: refactor: Gempyor.Inference needs to receive a "simulate" object enhancement Request for improvement or addition of new feature(s). gempyor Concerns the Python core. low priority Low priority. r-inference Relating to the R inference package.
#367 opened Oct 28, 2024 by pearsonca
[Feature request]: refactor model_info config Relating to configuration files or their framework. low priority Low priority.
#366 opened Oct 28, 2024 by pearsonca
@pearsonca
[Feature request]: EMCEE integration with inference_job.py batch Relating to batch processing. high priority High priority. inference Concerns the parameter inference framework.
#365 opened Oct 28, 2024 by jcblemai Inference Rebuild
@TimothyWillard
1
[Feature request]: Have gempyor been able to measure its pickled memory to setup batch run batch Relating to batch processing. gempyor Concerns the Python core. inference Concerns the parameter inference framework. medium priority Medium priority.
#360 opened Oct 25, 2024 by jcblemai
[Feature request]: Plotting capability to look at outcome probabilities and how modifiers affect them enhancement Request for improvement or addition of new feature(s). medium priority Medium priority.
#359 opened Oct 24, 2024 by saraloo
@pearsonca
[Bug]: Errors Using hpc_install_or_update.sh On UNC's Longleaf Cluster high priority High priority. installation Relating to installation / upgrade / migration. question There is an outstanding question about this issue.
#356 opened Oct 22, 2024 by anjalika-nande Under 1Hr New Users!
@anjalika-nande
12
[Feature request]: incorporate update / init capabilities into flepimop CLI batch Relating to batch processing. enhancement Request for improvement or addition of new feature(s). meta/workflow Relating to CI / issue templates / testing frameworks / etc. operations Refers to specific epi modeling objectives or scenario modeling goals.
#355 opened Oct 22, 2024 by pearsonca Under 1Hr New Users!
@pearsonca @TimothyWillard
[Feature request]: GitHub Action To Alert On Stale Branches low priority Low priority. meta/workflow Relating to CI / issue templates / testing frameworks / etc.
#354 opened Oct 18, 2024 by TimothyWillard
[Bug]: Clean Up flepicommon Library Call bug Defects or errors in the code. good first issue Good for newcomers. low priority Low priority. quick issue Short or easy fix. r-flepicommon Relating to the flepicommon R package.
#351 opened Oct 18, 2024 by TimothyWillard
[Bug]: flepiconfig Test Suite Currently Does Not Pass medium priority Medium priority. quick issue Short or easy fix. r-flepiconfig Relating to the R configuration package.
#350 opened Oct 18, 2024 by TimothyWillard
[Feature request]: Extract Compartments.plot Into A Standalone Function gempyor Concerns the Python core. low priority Low priority. plotting Relating to plotting and/or visualizations.
#349 opened Oct 17, 2024 by TimothyWillard
1
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