[Bug]: Different behaviour when running one_simulation(), compared to gempyor-simulate

[saraloo]

Label

gempyor

Priority Label

low priority

Describe the bug/issue

I have a config with a long chunk of outcomes. Not sure what is going on under the hood here but I get an error when running the config from a python notebook using one_simulation() but do not get any error when running gempyor-simulate from CLI.

To Reproduce

Config is https://github.com/HopkinsIDD/RSV_USA/blob/main/config_rsvnet_2024_vaccination_emcee.yml

When running the following command in python

gempyor_simulator = gempyor.GempyorInference(
    config_filepath="config_rsvnet_2024_vaccination_emcee.yml",
    run_id="test_run_id",
    prefix="test_prefix/",
    stoch_traj_flag=False,
    autowrite_seir=True,
)
gempyor_simulator.one_simulation(sim_id2write=0)

I get the following error

ValueError: ERROR with outcome incidH_age65to100_waned_v2: the specified source incidH_age65to100_waned is not a dictionnary (for seir outcome) nor an existing pre-identified outcomes.

But instead, running the following works with no errors

gempyor-simulate -c config_rsvnet_2024_vaccination_emcee.yml -n 1

Environment, if relevant

No response