Authors

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Jason Walker edited this page Aug 5, 2014 · 26 revisions

#Authors

Malachi Griffith, mgriffit[AT]genome.wustl.edu
Obi Griffith, ogriffit[AT]genome.wustl.edu
Jason Walker, jwalker[AT]genome.wustl.edu

The Genome Institute, Washington University School of Medicine

Table of Contents
Module 0: Authors | Citation | Syntax | Intro to AWS | Log into AWS | Unix | Environment | Resources
Module 1: Installation | Reference Genomes | Annotations | Indexing | Data | Data QC
Module 2: Adapter Trim | Alignment | IGV | Alignment Visualization | Alignment QC
Module 3: Expression | Differential Expression | DE Visualization
Module 4: Ref Guided | De novo | Merging | Differential Splicing | Splicing Visualization
Module 5: Kallisto
Appendix: Abbreviations | Lectures | Practical Exercise Solutions | Integrated Assignment | Proposed Improvements | AWS Setup