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63 Open 388 Closed
63 Open 388 Closed
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Issues list

cellxgene-schema CLI must add validation for obs['genetic_ancestry_*'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1114 opened Nov 18, 2024 by brianraymor
feat: remove seurat convertability check tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1112 opened Nov 18, 2024 by Bento007
4 tasks done
@ejmolinelli
1
cellxgene-schema CLI must update validation for uns['spatial'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1107 opened Nov 14, 2024 by brianraymor
cellxgene-schema CLI must update validation for obsm['X_{suffix}'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1106 opened Nov 14, 2024 by brianraymor
@joyceyan
cellxgene-schema CLI must update validation for obsm['spatial'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1105 opened Nov 14, 2024 by brianraymor
cellxgene-schema CLI must update validation for obs['in_tissue'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1104 opened Nov 14, 2024 by brianraymor
cellxgene-schema CLI must update validation for obs['cell_type_ontology_term_id'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1103 opened Nov 14, 2024 by brianraymor
@joyceyan
cellxgene-schema CLI must update validation for obs['assay_ontology_term_id'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1102 opened Nov 14, 2024 by brianraymor
cellxgene-schema CLI must update validation for obs['array_row'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1101 opened Nov 14, 2024 by brianraymor
cellxgene-schema CLI must update validation for obs['array_col'] 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1100 opened Nov 14, 2024 by brianraymor
cellxgene-schema must update validation for X (Matrix Layers) 5.3 Next minor CELLxGENE schema version after 5.2 curation software
#1099 opened Nov 14, 2024 by brianraymor
cellxgene-schema CLI must support Visium CytAssist Spatial Gene Expression 5.3 Next minor CELLxGENE schema version after 5.2 curation software Epic
#1098 opened Nov 14, 2024 by brianraymor
bug: anndata 0.11.0 breaking CLI bug Something isn't working curation software tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#1096 opened Nov 14, 2024 by Bento007
Human Brain Cell Atlas - revise cell_type annotation curation Updates to published datasets
#1093 opened Nov 13, 2024 by jahilton
@jahilton
1
Draft Microcebus murinus (gray mouse lemur) drafting drafting schema for species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1091 opened Nov 5, 2024 by brianraymor
cellxgene-schema CLI is not correctly enforcing obs['is_primary_data'] bug Something isn't working curation software dp Data Platform Team work
#1076 opened Oct 30, 2024 by brianraymor
1
Breaking change: one organism per dataset with matching feature reference 5.4 Next minor CELLxGENE schema version after 5.3 multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1074 opened Oct 28, 2024 by brianraymor
@brianraymor
5
Discovery for Productionalizing Multi-Species Validator Epic
#1058 opened Oct 22, 2024 by nayib-jose-gloria
Consider if the COG builder should only parse for certain subtrees of ontologies that CxG cares about P2
#1057 opened Oct 22, 2024 by nayib-jose-gloria
Investigate installing COG with only ontologies users are interested in P2
#1056 opened Oct 22, 2024 by nayib-jose-gloria
Investigate integrating a more flexible, established third-party validation tool P1
#1055 opened Oct 22, 2024 by nayib-jose-gloria
Package experimental validator CLI such that user can easily install + validate against their desired schema
#1054 opened Oct 22, 2024 by nayib-jose-gloria
Dataset MUST NOT contain duplicate obs, by raw counts 5.4 Next minor CELLxGENE schema version after 5.3 schema CELLxGENE Discover dataset schema
#1037 opened Oct 17, 2024 by jahilton
Draft "General species" requirements multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1036 opened Oct 15, 2024 by brianraymor
@brianraymor
Evolve development_stage_ontology_term_id to support multiple species multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
#1033 opened Oct 10, 2024 by brianraymor
@brianraymor
3
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