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Draft "General species" requirements #1036

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brianraymor opened this issue Oct 15, 2024 · 0 comments
Open

Draft "General species" requirements #1036

brianraymor opened this issue Oct 15, 2024 · 0 comments
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multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema

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brianraymor commented Oct 15, 2024

Blue Sky

Define the schema requirements for species without taxon-specific ontologies to increase velocity of submissions.

  1. Must identify a consensus gene reference. Preference is Ensembl, but not always available.
  2. Ensembl references must be reviewed in the schema.
  3. Must use CL for cell type
  4. Must use UBERON for tissue type
  5. Must use UBERON for development stages
@brianraymor brianraymor added schema CELLxGENE Discover dataset schema multispecies discovery Adding new species to CELLxGENE labels Oct 15, 2024
@brianraymor brianraymor self-assigned this Oct 15, 2024
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Labels
multispecies discovery Adding new species to CELLxGENE schema CELLxGENE Discover dataset schema
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