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Updated the requirements for X_{suffix} to include descendants of Visium Spatial Gene Expression.
Design
X_{suffix}
Key
X_{suffix} with the following requirements:
{suffix} MUST be at least one character in length.
The first character of {suffix} MUST be a letter of the alphabet and the remaining characters MUST be alphanumeric characters, '_', '-', or '.' (This is equivalent to the regular expression pattern "^[a-zA-Z][a-zA-Z0-9_.-]*$".)
{suffix} MUST NOT be "spatial".
{suffix} is presented as text to users in the Embedding Choice selector in CELLxGENE Explorer so it is STRONGLY RECOMMENDED that it be descriptive.
See also default_embedding in uns.
Annotator
Curator MUST annotate if assay_ontology_term_id is neither a descendant of "EFO:0010961" for Visium Spatial Gene Expression nor "EFO:0030062" for Slide-seqV2.
Curator MAY annotate if assay_ontology_term_id is either a descendant of "EFO:0010961" for Visium Spatial Gene Expression or "EFO:0030062" for Slide-seqV2.
Value
numpy.ndarray with the following requirements
MUST have the same number of rows as X and MUST include at least two columns
Changelog
X_{suffix}
to include descendants of Visium Spatial Gene Expression.Design
X_{suffix}
'_'
,'-'
, or'.'
(This is equivalent to the regular expression pattern"^[a-zA-Z][a-zA-Z0-9_.-]*$"
.)"spatial"
.{suffix} is presented as text to users in the Embedding Choice selector in CELLxGENE Explorer so it is STRONGLY RECOMMENDED that it be descriptive.
See also
default_embedding
inuns
.assay_ontology_term_id
is neither a descendant of"EFO:0010961"
for Visium Spatial Gene Expression nor"EFO:0030062"
for Slide-seqV2.Curator MAY annotate if
assay_ontology_term_id
is either a descendant of"EFO:0010961"
for Visium Spatial Gene Expression or"EFO:0030062"
for Slide-seqV2.numpy.ndarray
with the following requirementsX
and MUST include at least two columnsnumpy.dtype.kind
of"f"
,"i"
, or "u"
numpy.inf
) or negative infinity (numpy.NINF
) valuesnumpy.nan
) valuesThe text was updated successfully, but these errors were encountered: