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Switch to strobealign --aemb as default abundance estimator #333

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merged 1 commit into from
Jul 4, 2024

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  • Add Abundance.from_aemb function
  • Add --aemb flag on command line, similar to --bamdir
  • Update README and elsewhere that we recommend using strobealign --aemb

* Add `Abundance.from_aemb` function
* Add `--aemb` flag on command line, similar to `--bamdir`
* Update README and elsewhere that we recommend using strobealign --aemb
@jakobnissen jakobnissen merged commit 3e5121b into master Jul 4, 2024
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@jakobnissen jakobnissen deleted the parse_aemb branch July 4, 2024 11:22
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