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Do not make files lengths.npz and contignames #307

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Jul 4, 2024
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These files are redundant w.r.t. composition.npz. Although it takes more memory to load the latter, it's unlikely that storing the composition briefly is going to be a problem, since if it was, Vamb would cause OOM elsewhere anyway.

Closes #302

These files are redundant w.r.t. composition.npz. Although it takes more memory
to load the latter, it's unlikely that storing the composition briefly is going
to be a problem, since if it was, Vamb would cause OOM elsewhere anyway.
@jakobnissen jakobnissen requested a review from Paupiera April 22, 2024 13:04
@jakobnissen jakobnissen added the Needs workflow run Test the associated Snakemake workflow before merge label Apr 22, 2024
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I'm going to merge this, and we need to figure out some tests for these workflows before we release 5.0 anyway, so if this causes any bugs, we'll catch it then.

@jakobnissen jakobnissen merged commit 40b19af into master Jul 4, 2024
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@jakobnissen jakobnissen deleted the rmfiles branch July 4, 2024 12:58
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Do not output contig names and contig lengths
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