Skip to content

Commit

Permalink
Merge branch 'master' of github.com:RasmussenLab/vamb
Browse files Browse the repository at this point in the history
  • Loading branch information
jakobnissen committed Oct 26, 2020
2 parents 0571118 + fa33373 commit 5178747
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -69,7 +69,7 @@ python src/concatenate.py /path/to/catalogue.fna.gz /path/to/assemblies/sample1/
3. Use your favorite short-read aligner to map each your read files back to the resulting FASTA file:

```
minimap2 -I 50G -d catalogue.mmi /path/to/catalogue.fna.gz; # make index
minimap2 -d catalogue.mmi /path/to/catalogue.fna.gz; # make index
minimap2 -t 8 -N 50 -ax sr catalogue.mmi /path/to/reads/sample1.fw.fq.gz /path/to/reads/sample1.rv.fq.gz | samtools view -F 3584 -b --threads 8 > /path/to/bam/sample1.bam
```

Expand Down

0 comments on commit 5178747

Please sign in to comment.