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46 Open 89 Closed
46 Open 89 Closed
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Issues list

Ragtag fails randomly bug Something isn't working
#680 opened Nov 7, 2024 by johanneskoester
keep until https://github.com/bioconda/bioconda-recipes/pull/42192 and we can pin to 4.3.1 above...
#670 opened Oct 17, 2024 by github-actions bot
Add rules for generating report only with qc measures enhancement New feature or request
#606 opened Oct 25, 2023 by alethomas
-Oz generates a .vcf.gz!! todo
#570 opened Oct 12, 2022 by github-actions bot
Remove Masked polished sequence from reporting. RKI Only enhancement New feature or request invalid This doesn't seem right
#556 opened Aug 2, 2022 by alethomas
master and dev branch enhancement New feature or request
#538 opened May 11, 2022 by alethomas
1
Add a first init rule enhancement New feature or request
#537 opened May 10, 2022 by alethomas
@lenakinzel @vBassewitz
Include coverage plots in wastewater report bug Something isn't working
#518 opened Mar 28, 2022 by thomasbtf
Add csv table in report of all kallisto calls enhancement New feature or request
#517 opened Mar 28, 2022 by thomasbtf
generate report without found species diversity enhancement New feature or request
#514 opened Mar 24, 2022 by alethomas
automatically generate folders for data handling enhancement New feature or request
#509 opened Mar 23, 2022 by alethomas
newly initialized repo can't handle empty sample sheet bug Something isn't working
#508 opened Mar 23, 2022 by alethomas
Adjust structure of workflow for snakedeploy enhancement New feature or request paper
#506 opened Mar 23, 2022 by thomasbtf
Add more Illumina sequences to the CI environment enhancement New feature or request
#504 opened Mar 21, 2022 by thomasbtf
Add a minimum percentage of SARS-CoV-2 in the sample as criteria to create a pseudo assembly enhancement New feature or request
#497 opened Mar 14, 2022 by thomasbtf
Make number of lineages configurable in VOC table enhancement New feature or request
#494 opened Mar 3, 2022 by alethomas
Add CI check for VOC table enhancement New feature or request
#486 opened Feb 24, 2022 by alethomas
Add variant overview plot enhancement New feature or request
#485 opened Feb 24, 2022 by thomasbtf
@lenakinzel
1
To many Ns in final sequnces bug Something isn't working paper
#471 opened Feb 9, 2022 by thomasbtf
MultiQC naming bug Something isn't working
#469 opened Feb 9, 2022 by thomasbtf
Reduced size of variants over time plot bug Something isn't working
#468 opened Feb 9, 2022 by thomasbtf
Implement automatic primer resources for ARTIC v3 + v4 enhancement New feature or request
#432 opened Dec 23, 2021 by alethomas
Add CoVarPlot enhancement New feature or request
#430 opened Dec 22, 2021 by thomasbtf
Remove found species from overview table enhancement New feature or request
#415 opened Dec 17, 2021 by alethomas
Add flag if covid is not detected enhancement New feature or request
#384 opened Dec 8, 2021 by alethomas
@AKBrueggemann
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