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-Oz generates a .vcf.gz!! #570

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github-actions bot opened this issue Oct 12, 2022 · 0 comments

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todo

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github-actions bot commented Oct 12, 2022

uncovar/workflow/rules/variant_calling.smk

Line 103 in a0b6fd0

    
           "bcftools view -Oz -o {output} {input} 2> {log}"  # TODO -Oz generates a .vcf.gz!!

    conda:
        "../envs/bcftools.yaml"
    shell:
        "bcftools view -Oz -o {output} {input} 2> {log}"  # TODO -Oz generates a .vcf.gz!!


rule render_scenario:

github-actions bot added the todo label

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