Skip to content
@IKIM-Essen

Institute for AI in Medicine (IKIM)

Institute for AI in Medicine (IKIM); University of Duisburg-Essen

Popular repositories Loading

  1. uncovar uncovar Public

    Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.

    Python 21 8

  2. RiboSnake RiboSnake Public

    16S pipeline using qiime2 created with snakemake

    Python 10 1

  3. sars-cov-2-workflow-comparison sars-cov-2-workflow-comparison Public

    A collection of workflows for analyzing the SARS-CoV-2 genome.

    8 13

  4. master-project-seminar master-project-seminar Public

    DataScience in Bioinformatics WiSe 2022/23

    6 2

  5. ClusterDocs ClusterDocs Public

    4 8

  6. tech-talks tech-talks Public

    Discussion of patterns for using the IKIM machines

    Shell 3

Repositories

Showing 10 of 19 repositories
  • ikim-website Public

    ikim-website

    IKIM-Essen/ikim-website’s past year of commit activity
    TeX 0 MIT 2 0 0 Updated Nov 15, 2024
  • metagenomics_res Public
    IKIM-Essen/metagenomics_res’s past year of commit activity
    Python 0 MIT 0 4 1 Updated Nov 13, 2024
  • uncovar Public

    Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.

    IKIM-Essen/uncovar’s past year of commit activity
    Python 21 BSD-2-Clause 8 46 10 Updated Nov 12, 2024
  • EMCP-config Public

    IaC configuration of the Essen Medical Computing Platform (EMCP)

    IKIM-Essen/EMCP-config’s past year of commit activity
    Jinja 0 BSD-2-Clause 4 4 (1 issue needs help) 4 Updated Nov 6, 2024
  • ClusterDocs Public
    IKIM-Essen/ClusterDocs’s past year of commit activity
    4 BSD-2-Clause 8 1 0 Updated Oct 23, 2024
  • EMCP-slurm Public
    IKIM-Essen/EMCP-slurm’s past year of commit activity
    Dockerfile 0 BSD-2-Clause 0 0 1 Updated Oct 22, 2024
  • RiboSnake Public

    16S pipeline using qiime2 created with snakemake

    IKIM-Essen/RiboSnake’s past year of commit activity
    Python 10 MIT 1 5 2 Updated Oct 22, 2024
  • HyDRA Public
    IKIM-Essen/HyDRA’s past year of commit activity
    Python 1 0 0 0 Updated Aug 28, 2024
  • QC_pre_NextSeq Public

    Workflow for short quality control of MiSeq sequencing data before sequencing on high throughput devices (e.g. NextSeq)

    IKIM-Essen/QC_pre_NextSeq’s past year of commit activity
    Python 0 BSD-2-Clause 0 2 2 Updated Aug 5, 2024
  • master-project-seminar-202324 Public

    Data Science in Bioinformatics WS2023/24

    IKIM-Essen/master-project-seminar-202324’s past year of commit activity
    1 CC0-1.0 0 0 0 Updated Feb 16, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…