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input format check, #250 #332

input format check, #250

input format check, #250 #332

Workflow file for this run

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: GSEApy
on:
push:
branches: [ master ]
pull_request:
branches: [ master ]
jobs:
build:
runs-on: ubuntu-latest
strategy:
matrix:
# see supported version syntax in actions/setup-python. e.g. ">=3.10", "3.x"(latest)
python-version: ["3.7", "3.10", "3.x"]
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install --upgrade setuptools
python -m pip install wheel
python -m pip install lxml
pip install -r requirements.txt
- name: Lint with flake8
run: |
pip install flake8 flake8-black flake8-isort
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82,BLK100,I001,I002,I003,I004,I005 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
# - name: Test with covarege
# run: |
# cd ${GITHUB_WORKSPACE}
# pip install coverage
# pip install coveralls
# python setup.py install
# # coverage run setup.py test
- name: Test with pytest
run: |
cd ${GITHUB_WORKSPACE}
pip install pytest
pip install pytest-cov
pip install -e .
pytest
build_wheels:
name: Build wheels on ${{ matrix.os }}
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, windows-latest, macos-latest]
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
name: Install Python
with:
python-version: '3.x'
- uses: dtolnay/rust-toolchain@stable
with:
toolchain: stable
- name: Install cibuildwheel
run: |
python -m pip install cibuildwheel twine wheel
- name: Build wheels
run: |
python -m cibuildwheel --output-dir wheelhouse
env:
CIBW_BEFORE_ALL_LINUX: "curl https://sh.rustup.rs -sSf | sh -s -- -y"
CIBW_ENVIRONMENT_LINUX: 'PATH="$PATH:$HOME/.cargo/bin"'
# CIBW_ENVIRONMENT_MACOS: MACOSX_DEPLOYMENT_TARGET=10.9
CIBW_MANYLINUX_X86_64_IMAGE: quay.io/pypa/manylinux2014_x86_64:latest
CIBW_MANYLINUX_I686_IMAGE: quay.io/pypa/manylinux2014_i686:latest
CIBW_SKIP: cp36-* pp* *win32 *musl*
CIBW_PRERELEASE_PYTHONS: True