input format check, #250

zqfang · Dec 16, 2024 · 7d16d76 · 7d16d76
1 parent ee20565
commit 7d16d76
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/gseapy/gsea.py b/gseapy/gsea.py
@@ -518,6 +518,12 @@ def load_ranking(self):
         parse rnk input
         """
         rank_metric = self._load_data(self.rnk)  # gene id is the first column
+        # only two column dataframe is accepted
+        if rank_metric.shape[1] > 2:
+            raise ValueError(
+                "Input gene rankings should be a two column dataframe, "
+                + "with the first column as gene names and the second column as prerank values."
+            )
         if rank_metric.select_dtypes(np.number).shape[1] == 1:
             # return series
             return self._load_ranking(rank_metric)