Fix tests

yuqiyuqitan · Jan 25, 2024 · 9c409d1 · 9c409d1
1 parent a1296b5
commit 9c409d1
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Showing 3 changed files with 12 additions and 4 deletions.
diff --git a/src/spacec/plotting/__init__.py b/src/spacec/plotting/__init__.py
@@ -9,13 +9,19 @@
     stacked_bar_plot,
     zcount_thres,
 )
-from ._qptiff_converter import tissue_lables
-from ._segmentation import segmentation_ch, show_masks
+from ._qptiff_converter import (
+    tissue_lables
+)
+from ._segmentation import (
+    segmentation_ch, 
+    show_masks
+)
 
 __all__ = [
     # segmentation
     "segmentation_ch",
     "show_masks",
+
     # general
     "coordinates_on_image",
     "catplot",
@@ -27,5 +33,7 @@
     "dumbbell",
     "count_patch_proximity_res",
     "zcount_thres",
+
+    # qptiff converter
     "tissue_lables",
 ]
diff --git a/tests/__init__.py b/tests/__init__.py
diff --git a/tests/test_3_clustering.py b/tests/test_3_clustering.py
@@ -278,7 +278,7 @@ def test_3_clustering():
         )
 
         # cell type percentage tab and visualization [much few]
-        ct_perc_tab, _ = sc.pl.pl_stacked_bar_plot_ad(
+        ct_perc_tab, _ = sp.pl.stacked_bar_plot(
             adata=adata,  # adata object to use
             color="celltype_fine",  # column containing the categories that are used to fill the bar plot
             grouping="condition",  # column containing a grouping variable (usually a condition or cell group)
@@ -293,7 +293,7 @@ def test_3_clustering():
             norm=False,  # if True, then whatever plotted will be scaled to sum of 1
         )
 
-        sc.pl.pl_create_pie_charts_ad(
+        sp.pl.create_pie_charts(
             adata,
             color="celltype_fine",
             grouping="condition",