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update
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yufree committed Dec 20, 2023
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2 changes: 1 addition & 1 deletion deepspace/Dockerfile
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Expand Up @@ -7,7 +7,7 @@ RUN apt-get update \
yufree/pmd \
nhpatterson/RegCombIMS \
michalsta/opentims/opentimsr \
&& R -e "BiocManager::install(c('Cardinal','CardinalWorkflows','RNiftyReg','ClusterR','purrr','imager','umap','Rtsne','Matrix','igraph','tidygraph','ggraph','reshape2','dbscan','MALDIquantForeign','fpc','future','patchwork','ggridges','pheatmap','distances','ropls'))" \
&& R -e "BiocManager::install(c('duckdb','RNetCDF',Cardinal','CardinalWorkflows','RNiftyReg','ClusterR','purrr','imager','umap','Rtsne','Matrix','igraph','tidygraph','ggraph','reshape2','dbscan','MALDIquantForeign','fpc','future','patchwork','ggridges','pheatmap','distances','ropls'))" \
&& R -e "devtools::install_url('https://github.com/yufree/SimpleITKRInstaller/releases/download/v2.0.0/SimpleITK_2.0.0_R_x86_64-pc-linux-gnu.tar.gz',build=F)" \
&& rm -rf /tmp/downloaded_packages \
&& rm -rf /var/lib/apt/lists/* \
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