update

deepspace/Dockerfile

@@ -2,15 +2,13 @@ FROM rocker/geospatial:latest
 MAINTAINER "Miao Yu" [email protected]
 
 RUN apt-get update \
-  && R -e "BiocManager::install(c('Cardinal','CardinalWorkflows','RNiftyReg','ClusterR','purrr','imager','umap','Rtsne','Matrix','igraph','tidygraph','ggraph','opentimsr','reshape2','dbscan','MALDIquantForeign','fpc','future','patchwork','ggridges','pheatmap','distances','ropls'))" \
-  && R -e "devtools::install_url('https://github.com/yufree/SimpleITKRInstaller/releases/download/v2.0.0/SimpleITK_2.0.0_R_x86_64-pc-linux-gnu.tar.gz',build=F)" \
-  && rm -rf /tmp/downloaded_packages \
-  && strip /usr/local/lib/R/site-library/*/libs/* \
   && installGithub.r \
   yufree/enviGCMS \
   yufree/pmd \
   nhpatterson/RegCombIMS \
   michalsta/opentims/opentimsr \
+  && R -e "BiocManager::install(c('Cardinal','CardinalWorkflows','RNiftyReg','ClusterR','purrr','imager','umap','Rtsne','Matrix','igraph','tidygraph','ggraph','reshape2','dbscan','MALDIquantForeign','fpc','future','patchwork','ggridges','pheatmap','distances','ropls'))" \
+  && R -e "devtools::install_url('https://github.com/yufree/SimpleITKRInstaller/releases/download/v2.0.0/SimpleITK_2.0.0_R_x86_64-pc-linux-gnu.tar.gz',build=F)" \
   && rm -rf /tmp/downloaded_packages \
   && rm -rf /var/lib/apt/lists/* \
   && strip /usr/local/lib/R/site-library/*/libs/*