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Add busco#6

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rcannood merged 57 commits intoviash-hub:mainviash-hub/biobox:mainfrom dorien-er:add-buscodorien-er/biobase:add-buscoCopy head branch name to clipboardJan 31, 2024

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Commits on Jan 24, 2024

• config file and test data

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Commits on Jan 25, 2024

• organize config in argument groups and add script

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• add busco help text

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• add tests

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• add examples to config

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• add version script

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Commits on Jan 26, 2024

• Merge remote-tracking branch 'origin/main' into add-busco

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• Update src/busco/config.vsh.yaml

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• Update src/busco/script.sh

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• Update src/busco/script.sh

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• Update src/busco/config.vsh.yaml

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• Update version

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• add script to obtain test data

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• add changelog entry

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• Delete src/busco/version.sh

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Commits on Jan 29, 2024

• update cpus input

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Commits on Jan 30, 2024

• Merge branch 'main' into add-busco

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• Merge branch 'add-busco' of github.com:dorien-er/biobase into add-busco

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• Update src/busco/config.vsh.yaml

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• fix version

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• Update src/busco/config.vsh.yaml

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• Update src/busco/script.sh

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• Update src/busco/script.sh

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• move into separate module

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• merge

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• add outputs

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• update tests

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• remove download flags - to be a separate component

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• modify description of list dataset

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• fix tests

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• remove files new comp

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• remove defaults

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• Update src/busco/busco/config.vsh.yaml

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• Update src/busco/busco/config.vsh.yaml

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• Update src/busco/busco/config.vsh.yaml

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• Update src/busco/busco/config.vsh.yaml

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• Update src/busco/busco/script.sh

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• fix typo

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• remove unrequired params

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• remove unused vars

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• opt out of run stats by default

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• update tests

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• update test

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Commits on Jan 31, 2024

• remove directory level

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• add mkdir

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• enable copying from symlink

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• remove sleep command

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• Update src/busco/config.vsh.yaml

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• Update src/busco/test.sh

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• Update src/busco/test.sh

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• add output tests

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• fix typo

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• add genome test data and script

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• fix typo

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• typo

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• Merge remote-tracking branch 'origin/main' into add-busco

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• use smaller genome

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