2.0.2

Release v2.0.2 of the Unipept Desktop application provides support for using the new suffix array based backend of Unipept (see this post for more information on what changed internally).

This means that missed cleavage handling is always enabled (cannot be disabled anymore) and is much faster than before. Please note that the Windows version of Unipept will not automatically update to this release. It is recommended to download the installer here and install the newest version manually on Windows.

2.0.1

Release v2.0.1 of the Unipept Desktop application improves robustness by checking if a new release for the static database actually exists before trying to download one. This should overcome issues that arose prior to this release due to a failed server-side update.

Bug fixes:

• Fixed an issue where a non-existent static database was trying to be downloaded (#269, #270)

2.0.0

This release is a major milestone for the Unipept Desktop application. Version 2.0 of the application now provides support for the construction of targeted protein reference databases. This means that from now on, databases can be build that only contain proteins that are associated with a predefined list of taxon, supporting the analysis of proteogenomics datasets.

All documentation and info about this new release can be found on our website: https://unipept.ugent.be/desktop.

This version of Unipept Desktop requires Docker Desktop to be installed if you want to build custom protein reference databases. Docker Desktop can be downloaded from this link if it's not yet installed on your system.

2.0.0-beta.0

This is the first beta release of Unipept Desktop v2.0.0. Not much will change now between this beta version and the stable release of Unipept Desktop v2.0.0, which is expected to launch very soon.

Bug fixes:

• Update title of the application from "unipept-desktop" to "Unipept Desktop"

2.0.0-alpha.12

This release provides a fix for issues that could occur while exporting Unipept results and bumps the Electron version that's being used to Electron v21 (previous version was Electron v19).

New features / enhancements:

• Bumped Electron to v21 (#262)

Bug fixes:

• Fixed an issue where exported files contained too many columns (#263)

2.0.0-alpha.11

This release provides a hotfix for an issue where SVG downloads of the Unipept visualizations where corrupted. Upgrading to this version is recommended.

Bug fixes:

• Fixed an issue where SVG's got corrupted during download (#260)

2.0.0-alpha.10

This releases of the Unipept Desktop app introduces a new function that allows users to add custom Unipept endpoints. These endpoints include (un)official mirrors of the online Unipept service that are set up by us or third parties.

New features / enhancements:

• Add custom endpoint services that can be used for the analysis of a sample (#259).

2.0.0-alpha.9

This release provides a hotfix for an issue that was supposedly fixed in the previous version of the Unipept Desktop app, but that did pop up again on some machines. Upgrading to this newest version is recommended.

Bug fixes:

• Improved fix for an issue where exporting functional annotations summaries was not possible (#255, #257)

2.0.0-alpha.8

Release v2.0.0-alpha.8 of the Unipept Desktop application provides a solution for a few bug fixes.

Bug fixes:

• Fixed an issue where saving the functional annotations summary as a file was not possible (#255).
• Fixed an issue where saving the SVG-version of a heatmap resulted in the application doing nothing (#255).
• Fixed an issue where too many proteomes are marked as redundant by the app (#256).

2.0.0-alpha.7

Release v2.0.0-alpha.7 of the Unipept Desktop application provides a long list of fixes for small bugs and issues that were discovered while working with the application.

New features / enhancements:

• A warning is now shown when the user tries to add and process a reference proteome that's marked as redundant (#242).

Bug fixes:

• Pressing enter in the "add reference proteome" textfield now also adds the proteome to the selection (#239).
• Set a max width on the "sources" column in the custom database overview table (#238).
• The message "something changed about this assay" was shown much too frequent (#240).
• If too many taxa were selected for filtering, the list with all selected taxa overflowed (#244).
• Duplicating assays works again now (#246).
• No margin was present between the icon and text for the "add assay placeholder" in the ProjectExplorer (#248).
• Fixed an error that was thrown when no assays were selected (#249).
• Experiment summary dialog that shows the list of all unmatched peptides is no longer broken (#251).