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Software
Utz Ermel edited this page Nov 6, 2019
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- ImageStackAlignator - Alignment of subframes in dose-fractionation stacks
- Clicker - Visualization of EM images and stacks, 3D fiducial-based tilt series alignment and reconstruction configuration
- MarkerAlignator - Align marker files
- CTFDetector - CTF determination for low dose data
- EmSART - 3D reconstruction of entire tilt stacks
- EmSARTRefine - Projection-matching based structure refinement
- EmSartSubvolumes - 3D reconstruction of subtomograms
- SubTomogramAverageMPI - Subtomogram alignment and averaging
- AddParticles - Fast orientation/shifting and summing of subtomograms
- File formats
- Image formats
- Text formats
- *.cfg
- *.star
- *.pdb
- *.mmCIF
- File specifications
- Software
- Good practice
- Tutorial
- Tilt series alignment geometry