Hi-C Architect for Neural Networks

Snakemake wrapper around the Arima Capture Hi-C (CHiC) workflow

Snakemake workflow for processing Arima HIC data

This part is the python-rust interface for the iterative matrix correction

Multi-scale analysis of local differences in chromatin architecture

Trabajo de Fin de Master. Caracterización estructural, composicional y funcional de los quejigares del Parque Natural de la Sierra de Huétor

R package: TopDomStudy

Make a phylogeny using the chromatin structure information extracted from Hi-C experiments (mirror of the original repo)

Configurable Hi-C pipeline that is easy to use

A GUI application for labeling HiC data with rectangles.

A few tools for converting contact maps to .hic format compatible with the 4D Genome Browser.

R package: GSE84920.parser: Parsers for the GSE84920 Hi-C Data Sets of Ramani et al. (2017)

Using chromatin-chromatin interaction scores generated by the Capture Hi-C technology, I developed this R code during my six week internship in the Spicuglia lab, part of the INSERM institute (TAGC) related to the Aix-Marseille University, France, in order to identify the DNA interactions happening between different regions, specifically the int…

Projects realized during Computational Genomics course.

Pipeline to bin 10X, HiC, PacBio and ONT reads based on ancestry assemblies

migrated from Gitlab

Repo containing scripts for HiChIP data analysis

gghic

Non-Official Fork: Integrating Multi-Track Hi-C Data for Genome-Scale Reconstruction of 3D Chromatin Structure