Skip to content

Issues: timbitz/Whippet.jl

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

46 Open 48 Closed
46 Open 48 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Error while including unannotated splice-sites
#151 opened Jul 16, 2024 by ldenti
How do I know if an event in the .diff.gz output was calculated involving unannotated alternative junctions
#150 opened Jul 14, 2024 by santataRU
whippet index failed, link to download the hg38 GTF2.2 on this website does not work
#149 opened Jul 3, 2024 by santataRU
1
DNAmer not defined
#148 opened Mar 19, 2024 by Matthew47work
2
Is Whippet adapted for long reads?
#147 opened Mar 14, 2024 by Oliverfeudj
1
Regarding ArgumentError: cannot create a mer with ambiguous nucleotides
#144 opened Nov 17, 2023 by PRIYANKA-22091995
1
ERROR: expected package WaveletMatrices [c0580c95] to be registered when compiling
#142 opened Oct 11, 2023 by noahpieta
2
ERROR: LoadError: BoundsError: attempt to access BioSequences.LongDNASeq at index [65269405:65269446]
#141 opened Jun 26, 2023 by dschwoerer
1
Missing dependencies for Julia
#138 opened Nov 2, 2022 by astrophys
5
How whippet is listing alternative events?
#137 opened Sep 29, 2022 by pierreg2
2
Any idea to generate VCF/VEP files from Whippet output files?
#131 opened Jun 1, 2022 by ptnaimelmm
1
How to interpret complexity column in the .psi.gz output files?
#130 opened Feb 16, 2022 by MorticiaGiulia
1
Optimal value for --bam-min-reads parameter
#126 opened Oct 8, 2021 by narges-s
1
Probability for deltaPsi
#122 opened Jul 28, 2021 by OlgaVT
2
bam index file in .csi format
#120 opened May 31, 2021 by akshaya-v
2
Error during quantification of FASTQ files
#118 opened May 6, 2021 by dBenedek
12
--biascorrect specific error: LoadError: BoundsError: attempt to access 32nt DNA Sequence:
#114 opened Mar 6, 2021 by rfara
4
Option for reverse strand-specific data in bin/whippet-index.jl
#108 opened Jan 18, 2021 by areyesq89
how does whippet define exon skip events?
#107 opened Nov 6, 2020 by mhjiang97
5
Generate "sam | bam" files from the quantification step
#106 opened Sep 30, 2020 by JamalEH
support for fasta files or bam files as input in whippet-quant?
#105 opened Sep 10, 2020 by wbvguo
Splice junctions strandedness
#103 opened Jul 6, 2020 by PeterVenhuizen
1
Is it normal to have different number of events for different samples with same index.jls?
#102 opened Jun 17, 2020 by josegarciamanteiga
2
LoadError: InexactError() with single end
#100 opened Jun 2, 2020 by LucoLab
Feature Request: Variable boundaries like SUPPA
#99 opened Apr 3, 2020 by Alex-Nesta
5
ProTip! Exclude everything labeled bug with -label:bug.