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90 Open 236 Closed
90 Open 236 Closed
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Issues list

[theiaprok] upgrade amrfinderplus to latest version that includes stxtyper & db update
#672 opened Nov 7, 2024 by kapsakcj
Nextclade update for Flu & SC2
#669 opened Nov 6, 2024 by AndrewLangvt
[feature request] add support for SRS accession and other kinds of accessions in SRA_Fetch workflow
#664 opened Oct 30, 2024 by kapsakcj
GAMBIT misclassified genome Klebsiella/E. coli
#663 opened Oct 30, 2024 by michellescribner
Update Freyja docker image to include --pathogen flag
#655 opened Oct 21, 2024 by michellescribner
@cimendes
1
[TheiaProk] upgrade ANI database to RGDv3 to match PN2.0 enhancement This issue is a new feature or request
#649 opened Oct 17, 2024 by kapsakcj
4 tasks
[Terra_2_NCBI] Fail workflow if so samples are successful
#645 opened Oct 9, 2024 by cimendes
[All workflows] Create tasks to summarise version-control results such as docker and software version
#639 opened Oct 2, 2024 by cimendes
[TheiaMeta] Improve documentation
#638 opened Oct 1, 2024 by cimendes
@cimendes
[Terra_2_NCBI] collection_date failure
#637 opened Oct 1, 2024 by michellescribner
[Augur wf] Potential bug with augur_clades call block conditional run_traits
#633 opened Sep 27, 2024 by kapsakcj
4
[TheiaProk - Kleborate] Only run for Klebsiella pneumoniae
#632 opened Sep 27, 2024 by cimendes
[TheiaProk] Update Kleborate to v3
#631 opened Sep 27, 2024 by cimendes
[New workflow] Rabies analysis workflow
#626 opened Sep 18, 2024 by michellescribner
@cimendes
[New workflow] TheiaEuk_ONT
#625 opened Sep 18, 2024 by cimendes
1
@cimendes @Michal-Babins
[TheiaProk] add concatenate across lanes functionality
#621 opened Sep 17, 2024 by sage-wright
3
[TheiaProk] Add QC threshold functionality to export_taxon_tables optional task enhancement This issue is a new feature or request
#620 opened Sep 16, 2024 by kapsakcj
[TheiaProk] Output salmonella serogroup as additional column (SISTR)
#618 opened Sep 13, 2024 by kapsakcj
2
Concatenate Column Content: Add ability to add a column with sample names
#617 opened Sep 13, 2024 by jrotieno
[CI] Update CI to include standalone wfs and other wfs
#614 opened Sep 11, 2024 by kapsakcj
[theiaprok & theiaeuk] output GAMBIT distance & distance threshold to Terra data table
#613 opened Sep 11, 2024 by kapsakcj
[TheiaProk] add Bandage plot visualization
#611 opened Sep 10, 2024 by fraser-combe
[Assembly_fetch] Add support for downloading from NCBI Virus database enhancement This issue is a new feature or request
#607 opened Sep 6, 2024 by kapsakcj
1
Expose ONT read QC trim parameters
#604 opened Sep 5, 2024 by jrotieno
[cauris_cladetyper] remove all theiacauris references
#601 opened Sep 3, 2024 by sage-wright
@cimendes @Michal-Babins
ProTip! Updated in the last three days: updated:>2024-11-13.