[TheiaProk] add concatenate across lanes functionality

[sage-wright]

🆒

📌 Explain the Request

enable ability to concatenate multiple lanes and then run theiaprok in a single workflow

[kapsakcj]

FYI I wrote a workflow for concatenating illumina reads a while back, it was never moved over to PHB. https://github.com/theiagen/terra_utilities/blob/cjk-concatenate-illumina/workflows/wf_concatenate_illumina.wdl

[sage-wright]

this is exactly what we want to merge! V is using that workflow w/ their nextseq machine and wants to combine the two

maybe have some additional optional inputs for the additional lanes and then a boolean to trigger the concatenation?

[kapsakcj]

great! just make sure you were aware since they are likely the only user of it 😆