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    64 repositories

    • pairwise

      Public
      Code for describing the pairwise attention architecture
      Apache License 2.0
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • dsbook

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •2•0•0•1•Updated Dec 19, 2024Dec 19, 2024

    • cb2030

      Public
      Course material for CB2030
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •37•12•1•1•Updated Dec 12, 2024Dec 12, 2024

    • triqler

      Public
      The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
      Python
      •
      Apache License 2.0
      •11•21•5•0•Updated Dec 11, 2024Dec 11, 2024

    • bibook

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •20•0•0•0•Updated Oct 13, 2024Oct 13, 2024

    • percolator

      Public
      Semi-supervised learning for peptide identification from shotgun proteomics datasets
      C++
      •
      Other
      •36•0•0•0•Updated Aug 13, 2024Aug 13, 2024

    • smooth_q_to_pep

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •1•1•0•0•Updated Aug 12, 2024Aug 12, 2024

    • ContraNovo

      Public
      Experimenting with ContraNovo representations on MS2 data
      Python
      •1•0•0•0•Updated May 23, 2024May 23, 2024

    • statisticalbiotechnology.github.io

      Public
      ✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
      HTML
      •
      MIT License
      •16k•0•0•0•Updated May 20, 2024May 20, 2024

    • vrbiostat

      Public
      An analysis of success rates at VR-NT 2008-2016
      Jupyter Notebook
      •1•0•0•0•Updated Apr 18, 2024Apr 18, 2024

    • diffacto

      Public
      Python
      •
      Other
      •8•13•8•0•Updated Mar 19, 2024Mar 19, 2024

    • mipath

      Public
      Source code for MIPath, a pathway analysis method.
      Jupyter Notebook
      •
      Apache License 2.0
      •1•5•0•0•Updated Nov 14, 2023Nov 14, 2023

    • mad_decoy

      Public
      Some decoy experiments to help Yasset
      Python
      •
      Apache License 2.0
      •2•0•0•0•Updated Oct 26, 2023Oct 26, 2023

    • featureimportance

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 17, 2023Oct 17, 2023

    • centos_runner

      Public
      Runner for percolator builds under centos
      Dockerfile
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 2, 2023Oct 2, 2023

    • wall

      Public
      Patrik's repository for metabric analysis
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•0•1•Updated Jul 6, 2023Jul 6, 2023

    • decoy-decoy

      Public
      Test of differences of decoy databases
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 1, 2023Jun 1, 2023

    • dia_sum

      Public
      Patrick's repository
      Jupyter Notebook
      •1•2•0•0•Updated Apr 19, 2023Apr 19, 2023

    • lilliput

      Public
      Loingitudinal pathway analysis with PCA
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•0•0•Updated Jan 15, 2023Jan 15, 2023

    • maracluster

      Public
      Matthew The's implementation of MaRaCluster
      C++
      •
      Apache License 2.0
      •3•11•4•0•Updated Nov 22, 2022Nov 22, 2022

    • cryohmmer

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Oct 5, 2022Oct 5, 2022

    • prosittransformer

      Public
      Markus' project on predictions of ms2-spectra
      Jupyter Notebook
      •1•4•2•1•Updated Sep 5, 2022Sep 5, 2022

    • quandenser

      Public
      QUANtification by Distillation for ENhanced Signals with Error Regulation
      C++
      •
      Apache License 2.0
      •1•10•6•0•Updated Aug 20, 2022Aug 20, 2022

    • perc3paper

      Public
      Repository for paper writing
      Python
      •1•1•0•0•Updated Jul 31, 2022Jul 31, 2022

    • metabric-pathway-survival

      Public
      Plots and
      Python
      •
      Apache License 2.0
      •1•1•0•0•Updated Jun 29, 2022Jun 29, 2022

    • tape

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Jun 10, 2022Jun 10, 2022

    • simprot

      Public
      Folllow up on discussions at Lorentz center workshop on simulations of protein inferences
      Jupyter Notebook
      •0•0•0•0•Updated May 12, 2022May 12, 2022

    • ms2graph

      Public
      Code for the ms2graph project
      Python
      •
      Apache License 2.0
      •0•3•0•0•Updated Apr 6, 2022Apr 6, 2022

    • PythonDataScienceHandbook

      Public
      Python Data Science Handbook: full text in Jupyter Notebooks
      Jupyter Notebook
      •
      MIT License
      •18k•0•0•0•Updated Nov 19, 2021Nov 19, 2021

    • quandenser-pipeline

      Public
      A nextflow/singularity pipeline for quandenser
      Shell
      •
      Apache License 2.0
      •1•5•13•0•Updated Oct 6, 2021Oct 6, 2021