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    • warp

      Public
      WDL Analysis Research Pipelines
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •99•207•7•15•Updated Jan 10, 2025Jan 10, 2025

    • ops-terra-utils

      Public
      Python
      •0•3•0•1•Updated Jan 10, 2025Jan 10, 2025

    • dig-dug-portal

      Public
      Vue
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•0•Updated Jan 10, 2025Jan 10, 2025

    • ddp-study-server

      Public
      Pepper Study Server
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •5•8•1•4•Updated Jan 10, 2025Jan 10, 2025

    • palantir-workflows

      Public
      Utility workflows for the DSP hydro.gen team (formerly palantir)
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •8•22•4•4•Updated Jan 10, 2025Jan 10, 2025

    • dig-aggregator-methods

      Public
      Monorepo of methods implemented for the Aggregator
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•7•Updated Jan 10, 2025Jan 10, 2025

    • stp_segmentation_wdl

      Public
      WDL
      •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

    • cellpainting-gallery

      Public
      Cell Painting Gallery
      Other
      •12•74•5•1•Updated Jan 10, 2025Jan 10, 2025

    • juniper

      Public
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •5•9•0•7•Updated Jan 10, 2025Jan 10, 2025

    • pangenome-pipelines

      Public
      Terra WDL pipelines using the Human Pangenome Reference Graph
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

    • monorepo

      Public
      Compendium of tools for the Imaging Platform
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•9•12•1•Updated Jan 10, 2025Jan 10, 2025

    • carpenter-singh-lab-standards

      Public
      BSD 3-Clause "New" or "Revised" License
      •0•0•2•0•Updated Jan 10, 2025Jan 10, 2025

    • seqr-loading-pipelines

      Public
      hail-based pipelines for annotating variant callsets and exporting them to elasticsearch
      Python
      •
      MIT License
      •20•22•26•3•Updated Jan 10, 2025Jan 10, 2025

    • carmen-analysis

      Public
      Python
      •
      MIT License
      •0•3•0•0•Updated Jan 10, 2025Jan 10, 2025

    • gnomad_methods

      Public
      Hail helper functions for the gnomAD project and Translational Genomics Group
      genomicsgenomesexomeshail
      Python
      •
      MIT License
      •29•91•10•9•Updated Jan 10, 2025Jan 10, 2025

    • gatk

      Public
      Official code repository for GATK versions 4 and up
      sciencebioinformaticsgenomicsgenomengssequencingdnasparkgatk
      Java
      •
      Other
      •596•1.7k•1.2k•136•Updated Jan 10, 2025Jan 10, 2025

    • backstage

      Public
      Broad Institute Engineering Portal is an Internal Developer Platform (Spotify Backstage by another name)
      TypeScript
      •0•2•1•1•Updated Jan 10, 2025Jan 10, 2025

    • ml4h

      Public
      Python
      •
      Other
      •24•128•30•21•Updated Jan 10, 2025Jan 10, 2025

    • celldega

      Public
      Spatial omics analysis and visualization library
      Jupyter Notebook
      •
      Other
      •0•3•1•6•Updated Jan 10, 2025Jan 10, 2025

    • datarepo-helm

      Public
      A helm repo for Broad Data Science Platforms helm charts
      Mustache
      •1•5•0•4•Updated Jan 10, 2025Jan 10, 2025

    • gnomad-browser

      Public
      Explore gnomAD datasets on the web
      javascriptgenomicsgnomad
      TypeScript
      •
      MIT License
      •45•81•157•18•Updated Jan 10, 2025Jan 10, 2025

    • gnomad-toolbox

      Public
      This repository provides a set of Python functions to simplify working with gnomAD Hail Tables. It includes tools for data access, filtering, and analysis.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•5•Updated Jan 10, 2025Jan 10, 2025

    • warp-tools

      Public
      This repository contains all containers that WARP uses.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•9•1•11•Updated Jan 10, 2025Jan 10, 2025

    • CNV-Mag

      Public
      A Tool to Visualize CNV Events in WGS Data
      Python
      •
      MIT License
      •0•1•0•0•Updated Jan 10, 2025Jan 10, 2025

    • seqr-helm

      Public
      Helm charts for the seqr project
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Jan 10, 2025Jan 10, 2025

    • depmap-portal

      Public
      Code for the DepMap portal at depmap.org
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•8•0•5•Updated Jan 10, 2025Jan 10, 2025

    • gatk-sv

      Public
      A structural variation pipeline for short-read sequencing
      bioinformaticsgenomicsstructural-variationstructural-variants
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •71•175•74•25•Updated Jan 10, 2025Jan 10, 2025

    • sam

      Public
      workbench identity and access management
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •12•42•3•29•Updated Jan 10, 2025Jan 10, 2025

    • seqr

      Public
      web-based analysis tool for rare disease genomics
      Python
      •
      GNU Affero General Public License v3.0
      •89•179•44•4•Updated Jan 10, 2025Jan 10, 2025

    • thurloe

      Public
      A simple service to store arbitrary key/value pairs
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•0•4•Updated Jan 10, 2025Jan 10, 2025