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Pull requests: broadinstitute/gnomad_methods

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Pull requests list

Add loftee_labels and no_lof_flags parameters to filter_vep_transcript_csqs_expr for filtering by loftee labels and flags Changelog: new feature
#753 opened Jan 10, 2025 by jkgoodrich Loading…
@jkgoodrich @KoalaQin
Add functions to support padding and filtering intervals: filter_by_intervals, pad_intervals, parse_locus_intervals Changelog: new feature
#752 opened Jan 10, 2025 by jkgoodrich Loading…
@jkgoodrich @KoalaQin
Bump jinja2 from 3.1.4 to 3.1.5 in /docs in the pip group across 1 directory dependencies Pull requests that update a dependency file python Pull requests that update Python code
#751 opened Jan 8, 2025 by dependabot bot Loading…
Add browser tables to resources Changelog: new feature
#750 opened Jan 6, 2025 by KoalaQin Loading…
@jkgoodrich @KoalaQin
4
Add get_loftee_end_trunc_filter_expr and update_loftee_end_trunc_filter to patch the LOFTEE END_TRUNC filter Changelog: new feature
#740 opened Nov 28, 2024 by jkgoodrich Loading…
@jkgoodrich @KoalaQin
6
Add functions to check struct and array missingness Changelog: new feature
#738 opened Oct 29, 2024 by klaricch Loading…
@klaricch
42
Add filter_meta_array and change filter_arrays_by_meta to support more complex items_to_filter parameters by using filter_meta_array Changelog: new feature
#725 opened Aug 19, 2024 by jkgoodrich Loading…
@klaricch @jkgoodrich
32
Deprecate get_most_severe_consequence_for_summary in favor of more flexible get_most_severe_csq_from_multiple_csq_lists Changelog: new feature
#714 opened Jun 25, 2024 by jkgoodrich Loading…
@klaricch @jkgoodrich
27
Initial upload of VQSR workflow Variant QC
#470 opened Jul 22, 2022 by LindoNkambule • Draft
@jkgoodrich
13
Fix ref_allele_mismatch in liftover_expr for indel variants
#273 opened Nov 18, 2020 by mkanai • Draft
3
ProTip! Updated in the last three days: updated:>2025-01-07.