Repositories list

• NormalyzerDE

  Public
  Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.

  proteomicsnormalizationbioinformatics+ 2bioconductorlimma

  R

  •6•22•0•0•Updated Oct 17, 2024Oct 17, 2024

• proteoDeconv-manuscript

  Public
  Notebooks accompanying the manuscript for proteoDeconv

  R

  •

  MIT License

  •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

• proteoDeconv

  Public
  R package for cell type deconvolution of proteomics data

  R

  •

  Other

  •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• PlasmaEnrichment

  Public
  0•0•0•0•Updated Aug 3, 2024Aug 3, 2024

• OmicLoupe

  Public
  Understanding expression across comparisons and datasets through interactive visualization

  visualizationtabular-dataomics+ 2shiny-serversingularity

  R

  •

  MIT License

  •3•2•7•0•Updated Feb 9, 2023Feb 9, 2023

• OmicLoupeSupplementaryMaterials

  Public
  Code and parameter files related to the OmicLoupe manuscript supplementary materials

  HTML

  •

  MIT License

  •0•0•0•0•Updated Jan 21, 2021Jan 21, 2021

• ProteinRollup

  Public
  Collection of R-based protein rollups, heavily inspired by InfernoRDN

  R

  •

  Apache License 2.0

  •0•0•2•0•Updated Jun 4, 2020Jun 4, 2020

• FusariumResponseInOatMethods

  Public
  Interactive interface for study of Fusarium infection in oat

  R

  •0•0•0•0•Updated Feb 6, 2020Feb 6, 2020

• ProteinRollupShiny

  Public
  Shiny server for protein rollup

  R

  •0•0•0•0•Updated Nov 8, 2019Nov 8, 2019