Checking tests that were failing from the samtools/cramsize module.

nf-core · Jul 28, 2023 · a34398f · a34398f
1 parent e950f93
commit a34398f
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Showing 2 changed files with 4 additions and 5 deletions.
diff --git a/modules/nf-core/samtools/cramsize/main.nf b/modules/nf-core/samtools/cramsize/main.nf
@@ -29,7 +29,7 @@ process SAMTOOLS_CRAMSIZE {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        samtools: \$(echo \$(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*\$//' ))
+        samtools: \$(echo \$(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*\$//')
     END_VERSIONS
     """
 
@@ -40,7 +40,7 @@ process SAMTOOLS_CRAMSIZE {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        samtools: \$(echo \$(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*\$//' ))
+        samtools: \$(echo \$(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*\$//')
     END_VERSIONS
     """ 
 }
diff --git a/tests/modules/nf-core/samtools/cramsize/test.yml b/tests/modules/nf-core/samtools/cramsize/test.yml
@@ -1,8 +1,7 @@
-- name: test_samtools_cramsize
+- name: samtools cramsize test_samtools_cramsize
   command: nextflow run ./tests/modules/nf-core/samtools/cramsize -entry test_samtools_cramsize -c ./tests/config/nextflow.config -c ./tests/modules/nf-core/samtools/cramsize/nextflow.config
   tags:
-    - test.cram
-    - test.size
+    - samtools/cramsize
   files:
     - path: output/samtools/test.size
       md5sum: aff113286a3368bcb9c5b708bdf5f777