pyNBS.gene_conversion_tools.query_constructor

This function construct string for bach query to MyGene.Info v3.0.0 API.

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Function Call:

query_constructor(gene_list, exclude_prefixes=None, print_invalid_genes=False)

Parameters:

• gene_list (required, list): A list of gene names of query.
• exclude_prefixes (optional, str, default=None): Prefix that is not desired in the gene name.
• print_invalid_genes (optional, bool, default=False): Verbosity flag on whether or not to print invalid genes.

Returns:

• query_string (str): A string query of valid gene names as input for MyGene.Info.
• valid_query_genes (list): List of valid query gene names.
• invalid_query_genes (list): List of invalid query gene names.