Updating permission of Picard jar file in the Docker container #10

	name: Docker Build and Upload CI

	on:
	push:
	branches:
	- 'main'

	permissions:
	contents: read
	packages: write

	jobs:
	docker:
	runs-on: ubuntu-latest
	steps:
	-
	name: Checkout
	uses: actions/checkout@v4
	-
	name: Set up QEMU
	uses: docker/setup-qemu-action@v3
	-
	name: Set up Docker Buildx
	uses: docker/setup-buildx-action@v3
	-
	name: Login to GitHub Container Registry
	uses: docker/login-action@v3
	with:
	registry: ghcr.io
	username: ${{ github.actor }}
	password: ${{ secrets.GITHUB_TOKEN }}
	-
	name: Build and Push
	run: \|
	docker build --platform linux/amd64 -t ghcr.io/getwilds/samtools:latest -f Dockerfile_samtools .
	docker run ghcr.io/getwilds/samtools:latest
	docker push ghcr.io/getwilds/samtools:latest
	docker build --platform linux/amd64 -t ghcr.io/getwilds/gatk:latest -f Dockerfile_gatk .
	docker run ghcr.io/getwilds/gatk:latest
	docker push ghcr.io/getwilds/gatk:latest
	docker build --platform linux/amd64 -t ghcr.io/getwilds/bwa:latest -f Dockerfile_bwa .
	docker run ghcr.io/getwilds/bwa:latest
	docker push ghcr.io/getwilds/bwa:latest
	docker build --platform linux/amd64 -t ghcr.io/getwilds/picard:latest -f Dockerfile_picard .
	docker run ghcr.io/getwilds/picard:latest
	docker push ghcr.io/getwilds/picard:latest
	docker build --platform linux/amd64 -t ghcr.io/getwilds/biobambam2:latest -f Dockerfile_biobambam2 .
	docker run ghcr.io/getwilds/biobambam2:latest
	docker push ghcr.io/getwilds/biobambam2:latest

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