docker-images.yml

name: Docker Build and Upload CI

on:
  push:
    branches:
      - 'main'

permissions:
  contents: read
  packages: write

jobs:
  docker:
    runs-on: ubuntu-latest
    steps:
      -
        name: Checkout
        uses: actions/checkout@v4
      -
        name: Set up QEMU
        uses: docker/setup-qemu-action@v3
      -
        name: Set up Docker Buildx
        uses: docker/setup-buildx-action@v3
      -
        name: Login to GitHub Container Registry
        uses: docker/login-action@v3
        with:
          registry: ghcr.io
          username: ${{ github.actor }}
          password: ${{ secrets.GITHUB_TOKEN }}
      -
        name: Build and Push
        run: |
          docker build --platform linux/amd64 -t ghcr.io/getwilds/samtools:latest -f Dockerfile_samtools .
          docker run ghcr.io/getwilds/samtools:latest
          docker push ghcr.io/getwilds/samtools:latest
          docker build --platform linux/amd64 -t ghcr.io/getwilds/gatk:latest -f Dockerfile_gatk .
          docker run ghcr.io/getwilds/gatk:latest
          docker push ghcr.io/getwilds/gatk:latest
          docker build --platform linux/amd64 -t ghcr.io/getwilds/bwa:latest -f Dockerfile_bwa .
          docker run ghcr.io/getwilds/bwa:latest
          docker push ghcr.io/getwilds/bwa:latest
          docker build --platform linux/amd64 -t ghcr.io/getwilds/picard:latest -f Dockerfile_picard .
          docker run ghcr.io/getwilds/picard:latest
          docker push ghcr.io/getwilds/picard:latest
          docker build --platform linux/amd64 -t ghcr.io/getwilds/biobambam2:latest -f Dockerfile_biobambam2 .
          docker run ghcr.io/getwilds/biobambam2:latest
          docker push ghcr.io/getwilds/biobambam2:latest