Patch scipy<1.15 for anndata<0.11.2 #937
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Hi! This is the friendly automated conda-forge-linting service. I just wanted to let you know that I linted all conda-recipes in your PR ( |
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The diff from the CI run: Click for diff================================================================================
================================================================================
linux-armv7l
patching repodata: 0%| | 0/9 [00:00<?, ?it/s]
patching repodata: 11%|█ | 1/9 [00:00<00:05, 1.39it/s]
================================================================================
================================================================================
linux-ppc64le
patching repodata: 22%|██▏ | 2/9 [02:35<10:40, 91.53s/it]
================================================================================
================================================================================
linux-aarch64
patching repodata: 33%|███▎ | 3/9 [02:57<05:59, 59.86s/it]
================================================================================
================================================================================
noarch
noarch::anndata-0.6.22.post1-py_1.tar.bz2
noarch::anndata-0.6.22.post1-py_0.tar.bz2
- "scipy"
+ "scipy <1.15.0a0"
noarch::anndata-0.8.0-pyhd8ed1ab_1.tar.bz2
noarch::anndata-0.9.0-pyhd8ed1ab_0.conda
- "scipy >=1.4",
+ "scipy >=1.4,<1.15.0a0",
noarch::anndata-0.11.1-pyhff2d567_0.conda
noarch::anndata-0.11.0-pyhff2d567_1.conda
noarch::anndata-0.10.7-pyhd8ed1ab_0.conda
noarch::anndata-0.11.0-pyhd8ed1ab_0.conda
noarch::anndata-0.11.1-pyhd8ed1ab_1.conda
noarch::anndata-0.10.9-pyhd8ed1ab_0.conda
noarch::anndata-0.10.8-pyhd8ed1ab_0.conda
noarch::anndata-0.10.6-pyhd8ed1ab_0.conda
- "scipy >=1.8"
+ "scipy >=1.8,<1.15.0a0"
noarch::anndata-0.9.0-pyhd8ed1ab_1.conda
noarch::anndata-0.10.5.post1-pyhd8ed1ab_0.conda
noarch::anndata-0.10.4-pyhd8ed1ab_0.conda
noarch::anndata-0.10.1-pyhd8ed1ab_0.conda
noarch::anndata-0.10.5-pyhd8ed1ab_0.conda
noarch::anndata-0.10.2-pyhd8ed1ab_0.conda
noarch::anndata-0.10.0-pyhd8ed1ab_0.conda
noarch::anndata-0.10.3-pyhd8ed1ab_0.conda
noarch::anndata-0.9.2-pyhd8ed1ab_0.conda
noarch::anndata-0.9.1-pyhd8ed1ab_0.conda
- "scipy >=1.4"
+ "scipy >=1.4,<1.15.0a0"
patching repodata: 44%|████▍ | 4/9 [03:20<03:45, 45.03s/it]
================================================================================
================================================================================
win-32
patching repodata: 56%|█████▌ | 5/9 [03:42<02:27, 36.84s/it]
================================================================================
================================================================================
osx-arm64
osx-arm64::anndata-0.7.6-py39h2804cbe_0.tar.bz2
osx-arm64::anndata-0.7.8-py39h2804cbe_1.tar.bz2
osx-arm64::anndata-0.7.8-py39h2804cbe_0.tar.bz2
osx-arm64::anndata-0.7.8-py310hbe9552e_1.tar.bz2
osx-arm64::anndata-0.8.0-py39h2804cbe_0.tar.bz2
osx-arm64::anndata-0.7.7-py38h10201cd_0.tar.bz2
osx-arm64::anndata-0.7.7-py39h2804cbe_0.tar.bz2
osx-arm64::anndata-0.8.0-py38h10201cd_0.tar.bz2
osx-arm64::anndata-0.7.8-py38h10201cd_0.tar.bz2
osx-arm64::anndata-0.7.6-py38h10201cd_0.tar.bz2
osx-arm64::anndata-0.8.0-py310hbe9552e_0.tar.bz2
osx-arm64::anndata-0.7.8-py38h10201cd_1.tar.bz2
- "scipy >=1.4"
+ "scipy >=1.4,<1.15.0a0"
================================================================================
================================================================================
linux-64
linux-64::anndata-0.7.8-py38h578d9bd_0.tar.bz2
linux-64::anndata-0.7.8-py37h89c1867_1.tar.bz2
linux-64::anndata-0.7.6-py38h578d9bd_0.tar.bz2
linux-64::anndata-0.7.7-py38h578d9bd_0.tar.bz2
linux-64::anndata-0.7.8-py39hf3d152e_0.tar.bz2
linux-64::anndata-0.7.8-py39hf3d152e_1.tar.bz2
linux-64::anndata-0.7.6-py37h89c1867_0.tar.bz2
linux-64::anndata-0.7.8-py38h578d9bd_1.tar.bz2
linux-64::anndata-0.7.7-py39hf3d152e_0.tar.bz2
linux-64::anndata-0.7.6-py36h5fab9bb_0.tar.bz2
linux-64::anndata-0.7.6-py39hf3d152e_0.tar.bz2
linux-64::anndata-0.7.8-py37h89c1867_0.tar.bz2
linux-64::anndata-0.7.8-py310hff52083_1.tar.bz2
linux-64::anndata-0.8.0-py39hf3d152e_0.tar.bz2
linux-64::anndata-0.7.7-py37h89c1867_0.tar.bz2
linux-64::anndata-0.8.0-py310hff52083_0.tar.bz2
linux-64::anndata-0.8.0-py38h578d9bd_0.tar.bz2
- "scipy >=1.4"
+ "scipy >=1.4,<1.15.0a0"
linux-64::anndata-0.7.5-py39hf3d152e_0.tar.bz2
linux-64::anndata-0.7.1-py36_0.tar.bz2
linux-64::anndata-0.7.4-py38h32f6830_0.tar.bz2
linux-64::anndata-0.7.1-py37_0.tar.bz2
linux-64::anndata-0.7.3-py37hc8dfbb8_0.tar.bz2
linux-64::anndata-0.7.4-py36h5fab9bb_1.tar.bz2
linux-64::anndata-0.7-py36_0.tar.bz2
linux-64::anndata-0.7.5-py38h578d9bd_0.tar.bz2
linux-64::anndata-0.7.4-py38h578d9bd_1.tar.bz2
patching repodata: 67%|██████▋ | 6/9 [05:45<03:17, 65.95s/it]
linux-64::anndata-0.7.5-py37h89c1867_0.tar.bz2
linux-64::anndata-0.7-py37_0.tar.bz2
linux-64::anndata-0.7.4-py36h9f0ad1d_0.tar.bz2
linux-64::anndata-0.7.4-py39hf3d152e_1.tar.bz2
linux-64::anndata-0.7.3-py38h32f6830_0.tar.bz2
linux-64::anndata-0.7.3-py36h9f0ad1d_0.tar.bz2
linux-64::anndata-0.7.4-py37hc8dfbb8_0.tar.bz2
linux-64::anndata-0.7.5-py36h5fab9bb_0.tar.bz2
linux-64::anndata-0.7.1-py38_0.tar.bz2
linux-64::anndata-0.7.4-py37h89c1867_1.tar.bz2
- "scipy"
+ "scipy <1.15.0a0"
linux-64::anndata-0.8.0-py37h89c1867_0.tar.bz2
- "scipy >=1.4",
+ "scipy >=1.4,<1.15.0a0",
patching repodata: 78%|███████▊ | 7/9 [07:29<02:36, 78.40s/it]
================================================================================
================================================================================
win-64
win-64::anndata-0.7.8-py310h5588dad_1.tar.bz2
win-64::anndata-0.7.8-py39hcbf5309_1.tar.bz2
win-64::anndata-0.7.6-py36ha15d459_0.tar.bz2
win-64::anndata-0.7.7-py39hcbf5309_0.tar.bz2
win-64::anndata-0.8.0-py38haa244fe_0.tar.bz2
win-64::anndata-0.7.6-py39hcbf5309_0.tar.bz2
win-64::anndata-0.7.8-py38haa244fe_1.tar.bz2
win-64::anndata-0.7.8-py39hcbf5309_0.tar.bz2
win-64::anndata-0.7.7-py38haa244fe_0.tar.bz2
win-64::anndata-0.8.0-py39hcbf5309_0.tar.bz2
win-64::anndata-0.7.6-py38haa244fe_0.tar.bz2
win-64::anndata-0.8.0-py310h5588dad_0.tar.bz2
win-64::anndata-0.7.8-py37h03978a9_1.tar.bz2
win-64::anndata-0.7.7-py37h03978a9_0.tar.bz2
win-64::anndata-0.7.8-py38haa244fe_0.tar.bz2
win-64::anndata-0.7.6-py37h03978a9_0.tar.bz2
win-64::anndata-0.7.8-py37h03978a9_0.tar.bz2
- "scipy >=1.4"
+ "scipy >=1.4,<1.15.0a0"
win-64::anndata-0.7.4-py38haa244fe_1.tar.bz2
win-64::anndata-0.7.4-py36h9f0ad1d_0.tar.bz2
win-64::anndata-0.7.3-py38h32f6830_0.tar.bz2
win-64::anndata-0.7.5-py37h03978a9_0.tar.bz2
win-64::anndata-0.7.1-py36_0.tar.bz2
win-64::anndata-0.7.5-py36ha15d459_0.tar.bz2
win-64::anndata-0.7.1-py37_0.tar.bz2
win-64::anndata-0.7.4-py37h03978a9_1.tar.bz2
win-64::anndata-0.7.5-py38haa244fe_0.tar.bz2
win-64::anndata-0.7.5-py39hcbf5309_0.tar.bz2
win-64::anndata-0.7.4-py36ha15d459_1.tar.bz2
win-64::anndata-0.7-py36_0.tar.bz2
win-64::anndata-0.7-py37_0.tar.bz2
win-64::anndata-0.7.4-py38h32f6830_0.tar.bz2
win-64::anndata-0.7.4-py37hc8dfbb8_0.tar.bz2
win-64::anndata-0.7.3-py36h9f0ad1d_0.tar.bz2
win-64::anndata-0.7.1-py38_0.tar.bz2
win-64::anndata-0.7.3-py37hc8dfbb8_0.tar.bz2
win-64::anndata-0.7.4-py39hcbf5309_1.tar.bz2
- "scipy"
+ "scipy <1.15.0a0"
win-64::anndata-0.8.0-py37h03978a9_0.tar.bz2
- "scipy >=1.4",
+ "scipy >=1.4,<1.15.0a0",
================================================================================
patching repodata: 89%|████████▉ | 8/9 [08:26<01:11, 71.87s/it]
================================================================================
patching repodata: 100%|██████████| 9/9 [08:41<00:00, 54.02s/it]
osx-64
patching repodata: 100%|██████████| 9/9 [08:41<00:00, 57.97s/it]
osx-64::anndata-0.7-py36_0.tar.bz2
osx-64::anndata-0.7.4-py38h50d1736_1.tar.bz2
osx-64::anndata-0.7.3-py38h32f6830_0.tar.bz2
osx-64::anndata-0.7.5-py38h50d1736_0.tar.bz2
osx-64::anndata-0.7-py37_0.tar.bz2
osx-64::anndata-0.7.5-py39h6e9494a_0.tar.bz2
osx-64::anndata-0.7.4-py37hc8dfbb8_0.tar.bz2
osx-64::anndata-0.7.1-py36_0.tar.bz2
osx-64::anndata-0.7.4-py39h6e9494a_1.tar.bz2
osx-64::anndata-0.7.3-py37hc8dfbb8_0.tar.bz2
osx-64::anndata-0.7.1-py38_0.tar.bz2
osx-64::anndata-0.7.1-py37_0.tar.bz2
osx-64::anndata-0.7.3-py36h9f0ad1d_0.tar.bz2
osx-64::anndata-0.7.4-py38h32f6830_0.tar.bz2
osx-64::anndata-0.7.5-py36h79c6626_0.tar.bz2
osx-64::anndata-0.7.4-py36h9f0ad1d_0.tar.bz2
osx-64::anndata-0.7.4-py36h79c6626_1.tar.bz2
osx-64::anndata-0.7.4-py37hf985489_1.tar.bz2
osx-64::anndata-0.7.5-py37hf985489_0.tar.bz2
- "scipy"
+ "scipy <1.15.0a0"
osx-64::anndata-0.7.7-py38h50d1736_0.tar.bz2
osx-64::anndata-0.7.7-py39h6e9494a_0.tar.bz2
osx-64::anndata-0.7.8-py37hf985489_1.tar.bz2
osx-64::anndata-0.7.6-py36h79c6626_0.tar.bz2
osx-64::anndata-0.7.7-py37hf985489_0.tar.bz2
osx-64::anndata-0.8.0-py39h6e9494a_0.tar.bz2
osx-64::anndata-0.7.6-py39h6e9494a_0.tar.bz2
osx-64::anndata-0.7.6-py38h50d1736_0.tar.bz2
osx-64::anndata-0.7.8-py37hf985489_0.tar.bz2
osx-64::anndata-0.7.8-py39h6e9494a_1.tar.bz2
osx-64::anndata-0.8.0-py310h2ec42d9_0.tar.bz2
osx-64::anndata-0.7.8-py310h2ec42d9_1.tar.bz2
osx-64::anndata-0.7.8-py39h6e9494a_0.tar.bz2
osx-64::anndata-0.7.6-py37hf985489_0.tar.bz2
osx-64::anndata-0.7.8-py38h50d1736_0.tar.bz2
osx-64::anndata-0.7.8-py38h50d1736_1.tar.bz2
osx-64::anndata-0.8.0-py38h50d1736_0.tar.bz2
- "scipy >=1.4"
+ "scipy >=1.4,<1.15.0a0"
osx-64::anndata-0.8.0-py37hf985489_0.tar.bz2
- "scipy >=1.4",
+ "scipy >=1.4,<1.15.0a0",Note that the anndata history of being a noarch recipe is complex, hence the arch-specific binaries with modified repodata for these earlier versions:
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h-vetinari
approved these changes
Jan 9, 2025
3 tasks
5 tasks
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Checklist
pre-commit run -aand ensured all files pass the linting checks.python show_diff.pyand posted the output as part of the PR.scipy 1.15 introduced an incompatibility, which anndata fixed in 0.11.2. This patch prevents previous releases from being co-installed with scipy 1.15
cc: @flying-sheep, @conda-forge/anndata
xref: scverse/anndata#1806, conda-forge/anndata-feedstock#49, scverse/anndata#1802, scverse/anndata#1811, scverse/anndata#1813