Run GENCODE Bump Dry Run #4
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name: Run GENCODE Bump Dry Run | |
on: | |
workflow_dispatch | |
permissions: | |
id-token: write | |
contents: write | |
jobs: | |
gencode-dry-run: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v3 | |
- name: Set up Python | |
uses: actions/setup-python@v1 | |
with: | |
python-version: 3.9 | |
- name: Python cache | |
uses: actions/cache@v1 | |
with: | |
path: ~/.cache/pip | |
key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }} | |
restore-keys: | | |
${{ runner.os }}-pip- | |
- name: Install dependencies | |
run: | | |
pip install -r scripts/schema_bump_dry_run_genes/requirements.txt | |
- name: Configure AWS Credentials | |
uses: aws-actions/configure-aws-credentials@v2 | |
with: | |
aws-region: us-west-2 | |
role-to-assume: ${{ secrets.AWS_PROD_ROLE_TO_ASSUME }} | |
role-duration-seconds: 5400 | |
- name: Pull AWS Secrets | |
uses: aws-actions/aws-secretsmanager-get-secrets@v1 | |
with: | |
secret-ids: | |
AUTH0_SECRETS, corpora/backend/prod/auth0-secret | |
- name: Run Dry-Run Script | |
run: python3 -m scripts.schema_bump_dry_run_genes.gene_bump_dry_run | |
env: | |
corpus_env: "prod" | |
- name: upload to slack | |
run: | | |
curl -F [email protected] -F "initial_comment=Gene Dry Run Report" -F channels=${{secrets | |
.SLACK_CURATOR_REPORTING_CHANNEL}} -H "Authorization: Bearer ${{secrets.SLACK_CURATOR_REPORTING_APP_AUTH}}" https://slack.com/api/files.upload |