Publication release

No changes to use-case or output since 1.5.1.

Adds comparator data used in publication.

1.5.0 - merging and output standardisation

• Dual-guide count output is now same as single-guide
• All count output files are compressed with gzip
• Merging of count and statistics files implemented

1.4.0

• Adds mean_count_per_guide statistic to all modes.
• Correct bug in --boundary mode mapping (TinQ and QinT reversed).
• dual-guide: expand classifications to handle multiple guide-pair hits when one end unique.
• dual-guide: Adds the *.query_class.tsv.gz file for use in debugging (see #4).

1.3.0 - dual-guide features

1.3.0

• dual-guide: added library header item to deal with reversed read order when comparing against sgRNA.
  • See wiki entry
• dual-guide: handled data multiplication issue in CRAM outputs.
  • If more than 10 alternative alignments only the NH (number of alternatives) is populated, no SA aux tag.
  • Only primary mapping is output.

1.2.1 - bgzip format fix

Handles bug introduced by newer versions of magic interpreting bgzip slightly differently. See #3.

1.2.0 - Simple count mode for long-read

Add --unique option to long-read mode. Exits as soon as unique read sequence counts are generated.
Additional data added to outputs when run without this flag.

1.1.1 - Initial public release

license correction