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Import header from brainglobe-utils #188

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merged 2 commits into from
Apr 22, 2024
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Import header from brainglobe-utils #188

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307b16a
import header from brainglobe-utils
K-Meech Apr 15, 2024
76b3eb5
fix scroll area import
K-Meech Apr 15, 2024
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18 changes: 18 additions & 0 deletions brainreg/napari/register.py
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Original file line number Diff line number Diff line change
Expand Up @@ -13,11 +13,13 @@
from brainglobe_napari_io.brainmapper.brainmapper_reader_dir import (
load_registration,
)
from brainglobe_utils.qtpy.logo import header_widget
from fancylog import fancylog
from magicgui import magicgui
from napari._qt.qthreading import thread_worker
from napari.types import LayerDataTuple
from napari.utils.notifications import show_info
from qtpy.QtWidgets import QScrollArea

import brainreg as program_for_log
from brainreg.core.backend.niftyreg.run import run_niftyreg
Expand Down Expand Up @@ -218,6 +220,7 @@ def brainreg_register():
check_orientation_button=dict(
widget_type="PushButton", text="Check orientation"
),
scrollable=True,
)
def widget(
viewer: napari.Viewer,
Expand Down Expand Up @@ -594,4 +597,19 @@ def check_orientation(event=None):
scale=[s1, s2],
)

widget.native.layout().insertWidget(
0,
header_widget(
"brainreg",
"Automated 3D brain registration",
tutorial_file_name="tutorial-whole-brain-registration.html",
citation_doi="https://doi.org/10.1038/s41598-021-04676-9",
help_text="For help, hover the cursor over each parameter.",
),
)

scroll = QScrollArea()
scroll.setWidget(widget._widget._qwidget)
widget._widget._qwidget = scroll

return widget
2 changes: 1 addition & 1 deletion pyproject.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ requires-python = ">=3.9"
dependencies = [
"brainglobe-atlasapi>=2.0.1",
"brainglobe-space>=1.0.0",
"brainglobe-utils>=0.4.2",
"brainglobe-utils>=0.4.3",
"fancylog",
"numpy",
"scikit-image",
Expand Down
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