SIMSBIOHUB-656: Import CSV Markings #5649
Workflow file for this run
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| # Static Deploy On OpenShift | |
| # Builds and Deploys merged PR's to persistent pods/services/routes/etc in the OpenShift Dev or Test or Prod environment. | |
| name: Static Deploy on OpenShift | |
| on: | |
| pull_request: | |
| types: [closed] | |
| branches: | |
| - dev | |
| - test | |
| - test-spi | |
| - prod | |
| jobs: | |
| # Print variables for logging and debugging purposes | |
| checkEnv: | |
| name: Print Env variables | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 20 | |
| if: ${{ github.event.pull_request.merged == true }} | |
| steps: | |
| - name: Print Env Vars | |
| run: | | |
| echo OC CLI Version: $(oc version) | |
| echo Git Base Ref: ${{ github.base_ref }} | |
| echo Git Change ID: ${{ github.event.number }} | |
| echo Git Pull Request Ref: ${{ github.event.pull_request.head.sha }} | |
| echo Git Event Name: ${{ github.event_name }} | |
| echo Git Event Action: ${{ github.event.action }} | |
| echo Git Labels: "$LABELS" | |
| echo PR in Draft: ${{ github.event.pull_request.draft }} | |
| # Scale down any existing OpenShift pods for this PR deployment | |
| # Why? The new pods will be deployed before the existing pods are terminated, and twice the resources will be needed | |
| # in that moment. If not enough resources are available to spin up the new pods, then they may fail to deploy. | |
| scaleDownPods: | |
| name: Scale down the pods for this PR | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 20 | |
| if: ${{ github.event.pull_request.merged == true }} | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| needs: | |
| - checkEnv | |
| steps: | |
| # Install oc, which was removed from the ubuntu-latest image in v24.04 | |
| - name: Install OpenShift CLI tools | |
| uses: redhat-actions/openshift-tools-installer@v1 | |
| with: | |
| oc: "4.14" | |
| # Log in to OpenShift. | |
| # Note: The secrets needed to log in are NOT available if the PR comes from a FORK. | |
| # PR's must originate from a branch off the original repo or else all openshift `oc` commands will fail. | |
| - name: Log in to OpenShift | |
| run: oc login --token=${{ secrets.TOOLS_SA_TOKEN }} --server=https://api.silver.devops.gov.bc.ca:6443 | |
| - name: Scale down | |
| run: oc get deploymentconfig --namespace af2668-dev --selector env-id=$PR_NUMBER -o name | awk '{print "oc scale --replicas=0 " $1}' | bash | |
| # Checkout the repo once and cache it for use in subsequent jobs | |
| checkoutRepo: | |
| name: Checkout and cache target branch | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 20 | |
| if: ${{ github.event.pull_request.merged == true }} | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| needs: | |
| - checkEnv | |
| steps: | |
| # Install Node - for `node` and `npm` commands | |
| # Note: This already uses actions/cache internally, so repeat calls in subsequent jobs are not a performance hit | |
| - name: Setup Node.js | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 20 | |
| - name: Checkout Target Branch | |
| uses: actions/checkout@v4 | |
| with: | |
| persist-credentials: false | |
| # Cache the repo | |
| - name: Cache repo | |
| uses: actions/cache@v4 | |
| id: cache-repo | |
| env: | |
| cache-name: cache-repo | |
| with: | |
| # Cache repo based on the commit sha that triggered the workflow | |
| path: ${{ github.workspace }}/* | |
| key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ github.sha }} | |
| # Build the web frontend app image | |
| buildAPP: | |
| name: Build APP Image | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 20 | |
| if: ${{ github.event.pull_request.merged == true }} | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| BRANCH: ${{ github.base_ref }} | |
| needs: | |
| - checkoutRepo | |
| steps: | |
| # Install Node - for `node` and `npm` commands | |
| - name: Setup Node.js | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 20 | |
| # Load repo from cache | |
| - name: Cache repo | |
| uses: actions/cache@v4 | |
| id: cache-repo | |
| env: | |
| cache-name: cache-repo | |
| with: | |
| path: ${{ github.workspace }}/* | |
| key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ github.sha }} | |
| # Checkout the branch if not restored via cache | |
| - name: Checkout Target Branch | |
| if: steps.cache-repo.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v4 | |
| # Install oc, which was removed from the ubuntu-latest image in v24.04 | |
| - name: Install OpenShift CLI tools | |
| uses: redhat-actions/openshift-tools-installer@v1 | |
| with: | |
| oc: "4.14" | |
| # Log in to OpenShift. | |
| # Note: The secrets needed to log in are NOT available if the PR comes from a FORK. | |
| # PR's must originate from a branch off the original repo or else all openshift `oc` commands will fail. | |
| - name: Log in to OpenShift | |
| run: oc login --token=${{ secrets.TOOLS_SA_TOKEN }} --server=https://api.silver.devops.gov.bc.ca:6443 | |
| # Install app pipeline node modules | |
| - name: Install app pipeline node modules | |
| working-directory: "app/.pipeline/" | |
| run: npm ci | |
| # Build the app image | |
| - name: Build APP Image | |
| working-directory: "app/.pipeline/" | |
| run: | | |
| DEBUG=* npm run build -- --pr=$PR_NUMBER --branch=$BRANCH --type=static | |
| # Build the Database image | |
| buildDatabase: | |
| name: Build Database Image | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 20 | |
| if: ${{ github.event.pull_request.merged == true }} | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| BRANCH: ${{ github.base_ref }} | |
| needs: | |
| - checkoutRepo | |
| steps: | |
| # Install Node - for `node` and `npm` commands | |
| - name: Setup Node.js | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 20 | |
| # Load repo from cache | |
| - name: Cache repo | |
| uses: actions/cache@v4 | |
| id: cache-repo | |
| env: | |
| cache-name: cache-repo | |
| with: | |
| path: ${{ github.workspace }}/* | |
| key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ github.sha }} | |
| # Checkout the branch if not restored via cache | |
| - name: Checkout Target Branch | |
| if: steps.cache-repo.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v4 | |
| # Install oc, which was removed from the ubuntu-latest image in v24.04 | |
| - name: Install OpenShift CLI tools | |
| uses: redhat-actions/openshift-tools-installer@v1 | |
| with: | |
| oc: "4.14" | |
| # Log in to OpenShift. | |
| # Note: The secrets needed to log in are NOT available if the PR comes from a FORK. | |
| # PR's must originate from a branch off the original repo or else all openshift `oc` commands will fail. | |
| - name: Log in to OpenShift | |
| run: oc login --token=${{ secrets.TOOLS_SA_TOKEN }} --server=https://api.silver.devops.gov.bc.ca:6443 | |
| # Install database pipeline node modules | |
| - name: Install database pipeline node modules | |
| working-directory: "database/.pipeline/" | |
| run: npm ci | |
| # Build the database image | |
| - name: Build Database Image | |
| working-directory: "database/.pipeline/" | |
| run: | | |
| DEBUG=* npm run db:build -- --pr=$PR_NUMBER --branch=$BRANCH --type=static | |
| # Build the Database Setup image | |
| buildDatabaseSetup: | |
| name: Build Database Setup Image | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 20 | |
| if: ${{ github.event.pull_request.merged == true }} | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| BRANCH: ${{ github.base_ref }} | |
| needs: | |
| - checkoutRepo | |
| steps: | |
| # Install Node - for `node` and `npm` commands | |
| - name: Setup Node.js | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 20 | |
| # Load repo from cache | |
| - name: Cache repo | |
| uses: actions/cache@v4 | |
| id: cache-repo | |
| env: | |
| cache-name: cache-repo | |
| with: | |
| path: ${{ github.workspace }}/* | |
| key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ github.sha }} | |
| # Checkout the branch if not restored via cache | |
| - name: Checkout Target Branch | |
| if: steps.cache-repo.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v4 | |
| # Install oc, which was removed from the ubuntu-latest image in v24.04 | |
| - name: Install OpenShift CLI tools | |
| uses: redhat-actions/openshift-tools-installer@v1 | |
| with: | |
| oc: "4.14" | |
| # Log in to OpenShift. | |
| # Note: The secrets needed to log in are NOT available if the PR comes from a FORK. | |
| # PR's must originate from a branch off the original repo or else all openshift `oc` commands will fail. | |
| - name: Log in to OpenShift | |
| run: oc login --token=${{ secrets.TOOLS_SA_TOKEN }} --server=https://api.silver.devops.gov.bc.ca:6443 | |
| # Install database pipeline node modules | |
| - name: Install database pipeline node modules | |
| working-directory: "database/.pipeline/" | |
| run: npm ci | |
| # Build the database image | |
| - name: Build Database Setup Image | |
| working-directory: "database/.pipeline/" | |
| run: | | |
| DEBUG=* npm run db-setup:build -- --pr=$PR_NUMBER --branch=$BRANCH --type=static | |
| # Build the API image | |
| buildAPI: | |
| name: Build API Image | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 20 | |
| if: ${{ github.event.pull_request.merged == true }} | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| BRANCH: ${{ github.base_ref }} | |
| needs: | |
| - checkoutRepo | |
| steps: | |
| # Install Node - for `node` and `npm` commands | |
| - name: Setup Node.js | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 20 | |
| # Load repo from cache | |
| - name: Cache repo | |
| uses: actions/cache@v4 | |
| id: cache-repo | |
| env: | |
| cache-name: cache-repo | |
| with: | |
| path: ${{ github.workspace }}/* | |
| key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ github.sha }} | |
| # Checkout the branch if not restored via cache | |
| - name: Checkout Target Branch | |
| if: steps.cache-repo.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v4 | |
| # Install oc, which was removed from the ubuntu-latest image in v24.04 | |
| - name: Install OpenShift CLI tools | |
| uses: redhat-actions/openshift-tools-installer@v1 | |
| with: | |
| oc: "4.14" | |
| # Log in to OpenShift. | |
| # Note: The secrets needed to log in are NOT available if the PR comes from a FORK. | |
| # PR's must originate from a branch off the original repo or else all openshift `oc` commands will fail. | |
| - name: Log in to OpenShift | |
| run: oc login --token=${{ secrets.TOOLS_SA_TOKEN }} --server=https://api.silver.devops.gov.bc.ca:6443 | |
| # Install api pipeline node modules | |
| - name: Install api pipeline node modules | |
| working-directory: "api/.pipeline/" | |
| run: npm ci | |
| # Build the api image | |
| - name: Build API Image | |
| working-directory: "api/.pipeline/" | |
| run: | | |
| DEBUG=* npm run build -- --pr=$PR_NUMBER --branch=$BRANCH --type=static | |
| # Deploy APP image | |
| deployAPP: | |
| name: Deploy APP Image | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 20 | |
| if: ${{ github.event.pull_request.merged == true }} | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| BRANCH: ${{ github.base_ref }} | |
| needs: | |
| - scaleDownPods | |
| - buildAPP | |
| steps: | |
| # Install Node - for `node` and `npm` commands | |
| - name: Setup Node.js | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 20 | |
| # Load repo from cache | |
| - name: Cache repo | |
| uses: actions/cache@v4 | |
| id: cache-repo | |
| env: | |
| cache-name: cache-repo | |
| with: | |
| path: ${{ github.workspace }}/* | |
| key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ github.sha }} | |
| # Checkout the branch if not restored via cache | |
| - name: Checkout Target Branch | |
| if: steps.cache-repo.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v4 | |
| # Install oc, which was removed from the ubuntu-latest image in v24.04 | |
| - name: Install OpenShift CLI tools | |
| uses: redhat-actions/openshift-tools-installer@v1 | |
| with: | |
| oc: "4.14" | |
| # Log in to OpenShift. | |
| # Note: The secrets needed to log in are NOT available if the PR comes from a FORK. | |
| # PR's must originate from a branch off the original repo or else all openshift `oc` commands will fail. | |
| - name: Log in to OpenShift | |
| run: oc login --token=${{ secrets.TOOLS_SA_TOKEN }} --server=https://api.silver.devops.gov.bc.ca:6443 | |
| # Install app pipeline node modules | |
| - name: Install app pipeline node modules | |
| working-directory: "app/.pipeline" | |
| run: npm ci | |
| # Deploy the app image | |
| - name: Deploy APP Image | |
| working-directory: "app/.pipeline" | |
| run: | | |
| DEBUG=* npm run deploy -- --pr=$PR_NUMBER --env=$BRANCH --branch=$BRANCH --type=static | |
| # Deploy Database image | |
| deployDatabase: | |
| name: Deploy Database Image | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 20 | |
| if: ${{ github.event.pull_request.merged == true }} | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| BRANCH: ${{ github.base_ref }} | |
| needs: | |
| - scaleDownPods | |
| - buildDatabase | |
| steps: | |
| # Install Node - for `node` and `npm` commands | |
| - name: Setup Node.js | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 20 | |
| # Load repo from cache | |
| - name: Cache repo | |
| uses: actions/cache@v4 | |
| id: cache-repo | |
| env: | |
| cache-name: cache-repo | |
| with: | |
| path: ${{ github.workspace }}/* | |
| key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ github.sha }} | |
| # Checkout the branch if not restored via cache | |
| - name: Checkout Target Branch | |
| if: steps.cache-repo.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v4 | |
| # Install oc, which was removed from the ubuntu-latest image in v24.04 | |
| - name: Install OpenShift CLI tools | |
| uses: redhat-actions/openshift-tools-installer@v1 | |
| with: | |
| oc: "4.14" | |
| # Log in to OpenShift. | |
| # Note: The secrets needed to log in are NOT available if the PR comes from a FORK. | |
| # PR's must originate from a branch off the original repo or else all openshift `oc` commands will fail. | |
| - name: Log in to OpenShift | |
| run: oc login --token=${{ secrets.TOOLS_SA_TOKEN }} --server=https://api.silver.devops.gov.bc.ca:6443 | |
| # Install database pipeline node modules | |
| - name: Install database pipeline node modules | |
| working-directory: "database/.pipeline/" | |
| run: npm ci | |
| # Deploy the database image | |
| - name: Deploy Database Image | |
| working-directory: "database/.pipeline/" | |
| run: | | |
| DEBUG=* npm run db:deploy -- --pr=$PR_NUMBER --env=$BRANCH --branch=$BRANCH --type=static | |
| # Deploy Database setup image | |
| deployDatabaseSetup: | |
| name: Deploy Database Setup Image | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| if: ${{ github.event.pull_request.merged == true }} | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| BRANCH: ${{ github.base_ref }} | |
| needs: | |
| - scaleDownPods | |
| - buildDatabaseSetup | |
| - deployDatabase | |
| steps: | |
| # Install Node - for `node` and `npm` commands | |
| - name: Setup Node.js | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 20 | |
| # Load repo from cache | |
| - name: Cache repo | |
| uses: actions/cache@v4 | |
| id: cache-repo | |
| env: | |
| cache-name: cache-repo | |
| with: | |
| path: ${{ github.workspace }}/* | |
| key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ github.sha }} | |
| # Checkout the branch if not restored via cache | |
| - name: Checkout Target Branch | |
| if: steps.cache-repo.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v4 | |
| # Install oc, which was removed from the ubuntu-latest image in v24.04 | |
| - name: Install OpenShift CLI tools | |
| uses: redhat-actions/openshift-tools-installer@v1 | |
| with: | |
| oc: "4.14" | |
| # Log in to OpenShift. | |
| # Note: The secrets needed to log in are NOT available if the PR comes from a FORK. | |
| # PR's must originate from a branch off the original repo or else all openshift `oc` commands will fail. | |
| - name: Log in to OpenShift | |
| run: oc login --token=${{ secrets.TOOLS_SA_TOKEN }} --server=https://api.silver.devops.gov.bc.ca:6443 | |
| # Install database pipeline node modules | |
| - name: Install database pipeline node modules | |
| working-directory: "database/.pipeline/" | |
| run: npm ci | |
| # Deploy the database setup image | |
| - name: Deploy Database Setup Image | |
| working-directory: "database/.pipeline/" | |
| run: | | |
| DEBUG=* npm run db-setup:deploy -- --pr=$PR_NUMBER --env=$BRANCH --branch=$BRANCH --type=static | |
| # Deploy API image | |
| deployAPI: | |
| name: Deploy API Image | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 20 | |
| if: ${{ github.event.pull_request.merged == true }} | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| BRANCH: ${{ github.base_ref }} | |
| needs: | |
| - scaleDownPods | |
| - buildAPI | |
| - deployDatabase | |
| steps: | |
| # Install Node - for `node` and `npm` commands | |
| - name: Setup Node.js | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 20 | |
| # Load repo from cache | |
| - name: Cache repo | |
| uses: actions/cache@v4 | |
| id: cache-repo | |
| env: | |
| cache-name: cache-repo | |
| with: | |
| path: ${{ github.workspace }}/* | |
| key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ github.sha }} | |
| # Checkout the branch if not restored via cache | |
| - name: Checkout Target Branch | |
| if: steps.cache-repo.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v4 | |
| # Install oc, which was removed from the ubuntu-latest image in v24.04 | |
| - name: Install OpenShift CLI tools | |
| uses: redhat-actions/openshift-tools-installer@v1 | |
| with: | |
| oc: "4.14" | |
| # Log in to OpenShift. | |
| # Note: The secrets needed to log in are NOT available if the PR comes from a FORK. | |
| # PR's must originate from a branch off the original repo or else all openshift `oc` commands will fail. | |
| - name: Log in to OpenShift | |
| run: oc login --token=${{ secrets.TOOLS_SA_TOKEN }} --server=https://api.silver.devops.gov.bc.ca:6443 | |
| # Install api pipeline node modules | |
| - name: Install api pipeline node modules | |
| working-directory: "api/.pipeline/" | |
| run: npm ci | |
| # Deploy the api image | |
| - name: Deploy API Image | |
| working-directory: "api/.pipeline/" | |
| run: | | |
| DEBUG=* npm run deploy -- --pr=$PR_NUMBER --env=$BRANCH --branch=$BRANCH --type=static | |
| # Clean build/deployment artifacts | |
| clean: | |
| name: Clean Build/Deployment Artifacts | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 20 | |
| if: ${{ github.event.pull_request.merged == true }} | |
| needs: | |
| - deployDatabase | |
| - deployDatabaseSetup | |
| - deployAPI | |
| - deployAPP | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| BRANCH: ${{ github.base_ref }} | |
| steps: | |
| # Install Node - for `node` and `npm` commands | |
| - name: Setup Node.js | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 20 | |
| # Load repo from cache | |
| - name: Cache repo | |
| uses: actions/cache@v4 | |
| id: cache-repo | |
| env: | |
| cache-name: cache-repo | |
| with: | |
| path: ${{ github.workspace }}/* | |
| key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ github.sha }} | |
| # Checkout the branch if not restored via cache | |
| - name: Checkout Target Branch | |
| if: steps.cache-repo.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v4 | |
| # Install oc, which was removed from the ubuntu-latest image in v24.04 | |
| - name: Install OpenShift CLI tools | |
| uses: redhat-actions/openshift-tools-installer@v1 | |
| with: | |
| oc: "4.14" | |
| # Log in to OpenShift. | |
| # Note: The secrets needed to log in are NOT available if the PR comes from a FORK. | |
| # PR's must originate from a branch off the original repo or else all openshift `oc` commands will fail. | |
| - name: Log in to OpenShift | |
| run: oc login --token=${{ secrets.TOOLS_SA_TOKEN }} --server=https://api.silver.devops.gov.bc.ca:6443 | |
| # Clean the app deployment artifacts | |
| - name: Clean APP Deployment | |
| working-directory: "app/.pipeline/" | |
| run: | | |
| npm ci | |
| DEBUG=* npm run clean -- --pr=$PR_NUMBER --env=build | |
| DEBUG=* npm run clean -- --pr=$PR_NUMBER --env=dev | |
| # Clean the database build/deployment artifacts | |
| - name: Clean Database Artifacts | |
| working-directory: "database/.pipeline/" | |
| run: | | |
| npm ci | |
| DEBUG=* npm run clean -- --pr=$PR_NUMBER --env=build | |
| DEBUG=* npm run clean -- --pr=$PR_NUMBER --env=dev | |
| # Clean the api deployment artifacts | |
| - name: Clean API Deployment | |
| working-directory: "api/.pipeline/" | |
| run: | | |
| npm ci | |
| DEBUG=* npm run clean -- --pr=$PR_NUMBER --env=build | |
| DEBUG=* npm run clean -- --pr=$PR_NUMBER --env=dev | |
| # Clean the reamaining build/deployment artifacts | |
| - name: Clean remaining Artifacts | |
| env: | |
| POD_SELECTOR: biohubbc | |
| run: | | |
| oc --namespace af2668-dev get all,pvc,secret,pods,ReplicationController,DeploymentConfig,HorizontalPodAutoscaler,imagestreamtag -o name | grep $POD_SELECTOR | grep $PR_NUMBER | awk '{print "oc delete --ignore-not-found " $1}' | bash | |
| oc --namespace af2668-tools get all,pvc,secret,pods,ReplicationController,DeploymentConfig,HorizontalPodAutoscaler,imagestreamtag -o name | grep $POD_SELECTOR | grep $PR_NUMBER | awk '{print "oc delete --ignore-not-found " $1}' | bash |