Since the barcode01 for Ins assumes the presence of a deletion, modif… #849
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name: Pytest for Ubuntu / macOS latest | |
on: | |
push: | |
schedule: | |
- cron: "0 2 * * 1" # The task runs at 2 a.m. every Monday. | |
jobs: | |
build: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
max-parallel: 10 | |
matrix: | |
os: [ubuntu-latest, macos-latest] | |
python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] | |
name: Python ${{ matrix.python-version }} on ${{ matrix.os }} | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: conda-incubator/setup-miniconda@v3 | |
with: | |
python-version: ${{ matrix.python-version }} | |
miniconda-version: "latest" | |
activate-environment: test-env | |
channels: bioconda, conda-forge, defaults | |
- name: Setup conda environment | |
run: | | |
conda create -y -n env-dajin2 python=${{ matrix.python-version }} pip pytest | |
- name: Execute tests | |
env: | |
PYTHONPATH: src | |
run: | | |
conda activate env-dajin2 | |
# Use pip because conda does not support pyproject.toml. | |
pip install -e . | |
pytest tests/ -p no:warnings -vv |