pytest.yml

name: Pytest for Ubuntu / macOS latest

on:
    push:
    schedule:
        - cron: "0 2 * * 1" # The task runs at 2 a.m. every Monday.

jobs:
    build:
        runs-on: ${{ matrix.os }}
        strategy:
            max-parallel: 10
            matrix:
                os: [ubuntu-latest, macos-latest]
                python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
        name: Python ${{ matrix.python-version }} on ${{ matrix.os }}

        defaults:
            run:
                shell: bash -l {0}

        steps:
            - uses: actions/checkout@v4
            - uses: conda-incubator/setup-miniconda@v3
              with:
                  python-version: ${{ matrix.python-version }}
                  miniconda-version: "latest"
                  activate-environment: test-env
                  channels: bioconda, conda-forge, defaults

            - name: Setup conda environment
              run: |
                  conda create -y -n env-dajin2 python=${{ matrix.python-version }} pip pytest

            - name: Execute tests
              env:
                  PYTHONPATH: src
              run: |
                  conda activate env-dajin2

                  # Use pip because conda does not support pyproject.toml.
                  pip install -e .
                  pytest tests/ -p no:warnings -vv