Welcome

Histology Topography Cytometry Analysis Toolbox (histoCAT) is a package to visualize and analyse multiplexed image cytometry data interactively.

Cite: https://www.nature.com/articles/nmeth.4391

Getting Started

histoCAT is automatically installed from the web when running the app installer file corresponding to your operating system which is available at https://github.com/SchapiroLabor/histoCAT/releases.

Windows users must have Visual Studio installed for features like PhenoGraph to function. If it’s not already installed on your computer download it from https://www.visualstudio.com/downloads/.

For further informations read the corresponding manual available at https://github.com/SchapiroLabor/histoCAT/releases.

Installation

Detailed installation instructions are available in the installation manual at https://github.com/SchapiroLabor/histoCAT/releases.

User instructions

We are currently working on the histoCAT wiki

For further details please read the corresponding manual available at https://github.com/BodenmillerGroup/histoCAT/releases.

Using histoCAT from source

Please use MATLAB2014b and load the full histoCAT folder into your MATLAB path. Run histoCAT.m to start histoCAT from source.