Histology Topography Cytometry Analysis Toolbox (histoCAT) is a package to visualize and analyse multiplexed image cytometry data interactively.
Cite: https://www.nature.com/articles/nmeth.4391
histoCAT is automatically installed from the web when running the app installer file corresponding to your operating system which is available at https://github.com/SchapiroLabor/histoCAT/releases.
Windows users must have Visual Studio installed for features like PhenoGraph to function. If it’s not already installed on your computer download it from https://www.visualstudio.com/downloads/.
For further informations read the corresponding manual available at https://github.com/SchapiroLabor/histoCAT/releases.
Detailed installation instructions are available in the installation manual at https://github.com/SchapiroLabor/histoCAT/releases.
We are currently working on the histoCAT wiki
For further details please read the corresponding manual available at https://github.com/BodenmillerGroup/histoCAT/releases.
Please use MATLAB2014b and load the full histoCAT folder into your MATLAB path. Run histoCAT.m to start histoCAT from source.