Workflows update #54
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Workflows update #54
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added 12 commits
October 18, 2023 19:08
- managed to include more models for comparison
- query torque cluster execution status changed, updated and moved - v2 of workflow now creates config files automatically which can still be used with version one - use pre-created conda environment with rule
- can create the configs needed for current workflow in Snakefile Next: Test and swap + document
-> Snakefile in project folder
- document relationship between updated and old workflow's configuration files (-> how to specify models and parameters)
- `testNotebooks.smk` can do it. - set kernel to current environement (generic "Python 3")
for base workflow configuration (Snakefile vs Snakefile_v2)
- msImpute and trKNN failed
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For now only a new workflow is added, and the default switch will be done later.