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Workflow file for this run
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| name: Test that tutorial runs on latest colab image | |
| on: | |
| push: | |
| schedule: | |
| - cron: '0 2 3 * *' | |
| jobs: | |
| test: | |
| name: Test | |
| runs-on: ubuntu-latest-4core # increase disk space | |
| # https://console.cloud.google.com/artifacts/docker/colab-images/europe/public/runtime | |
| container: | |
| image: europe-docker.pkg.dev/colab-images/public/runtime:latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install pimms-learn (from branch) and papermill | |
| if: github.event_name == 'push' | |
| run: | | |
| echo $GITHUB_REF | |
| echo "Branch or Tag: ${{ github.ref }}" | |
| pip install . | |
| # pip install git+https://github.com/RasmussenLab/pimms.git@$GITHUB_SHA | |
| cd docs | |
| echo python3 -c "import pimmslearn; print(pimmslearn.__version__)" | |
| python3 -c "import pimmslearn; print(pimmslearn.__version__)" | |
| - name: Test tutorials | |
| run: | | |
| python3 -m pip install papermill ipykernel njab | |
| cd docs/tutorial | |
| papermill explorative_analysis.ipynb --help-notebook | |
| papermill log_reg.ipynb --help-notebook | |
| papermill log_reg.ipynb log_reg_tested.ipynb | |
| papermill explorative_analysis.ipynb explorative_analysis_tested.ipynb | |